Basic Information

Insect: Dilophus febrilis
Gene Symbol: grau_5
Assembly: GCA_958336335.1
Location: OY284469.1:2011815-2013886[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0049 0.28 12.1 2.3 2 23 208 230 207 230 0.97

2 10 0.23 13 6.9 1.2 6 23 239 256 239 256 0.99

3 10 7.8e-07 4.5e-05 24.1 3.6 1 23 262 284 262 284 0.99

4 10 0.00046 0.026 15.4 6.4 1 23 292 315 292 315 0.93

5 10 5.9e-05 0.0034 18.1 0.1 1 23 323 346 323 346 0.96

6 10 0.15 8.7 7.4 0.7 3 23 354 374 353 374 0.96

7 10 0.008 0.46 11.4 0.1 2 23 384 405 383 405 0.97

8 10 6.2e-05 0.0035 18.1 0.2 1 23 410 433 410 433 0.95

9 10 0.00027 0.016 16.0 3.7 1 23 438 460 438 460 0.96

10 10 9.6e-05 0.0055 17.5 1.8 1 23 466 489 466 489 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0049	0.28	12.1	2.3	2	23	208	230	207	230	0.97
2	10	0.23	13	6.9	1.2	6	23	239	256	239	256	0.99
3	10	7.8e-07	4.5e-05	24.1	3.6	1	23	262	284	262	284	0.99
4	10	0.00046	0.026	15.4	6.4	1	23	292	315	292	315	0.93
5	10	5.9e-05	0.0034	18.1	0.1	1	23	323	346	323	346	0.96
6	10	0.15	8.7	7.4	0.7	3	23	354	374	353	374	0.96
7	10	0.008	0.46	11.4	0.1	2	23	384	405	383	405	0.97
8	10	6.2e-05	0.0035	18.1	0.2	1	23	410	433	410	433	0.95
9	10	0.00027	0.016	16.0	3.7	1	23	438	460	438	460	0.96
10	10	9.6e-05	0.0055	17.5	1.8	1	23	466	489	466	489	0.98

Sequence Information

Coding Sequence: atggatcaatctaaaatgtgtatattatgttacaatttattaaatgatgataagaaaatcatttatttatctagTGATAAAAaacaTTTACACTTTATTAAACTTGATGAGAATGTTCACAATGAAATTACTGTTAAAAAAGAACAATCAAAATGTGAACGGAAATCCGTTAGTAATGAACCGGCTGTTAATATCATTGACGATGTCGAATCAACCAATATAACAAATCTGTGGATTGAAGAAATACACCCAGACATTCATGAATATAATTCAGATGATGAAAAGGTAACAAAAACAACGAAGATACTAAACAAACCTAGATTAAGATCGGCTTCAATAAGGAATACGGTAAATACTAATccgaaacaaaaaaatactaaaaaacaCAGTAAAGAGATTAAAAAAGAACAAATAAACAGTAGCGGAGAGCACCAAGCAAGTATAGTTTCTAACCAAATGAATGTATGTACAACAACACCAATAATAATTGATCGACATTTATTAGAAACATCATCATCAAGAATTCTAATCGGTGAATGTGATgcgaaaaatttaaatgaaattgaaaaaaatataaaagatgaACGTGAAAATGAACAAATTCGTGAATACTTTAAAATGCAATGCGATTTATGTGaacatacatttaaaaaattatcagaAGCAAAAACTCATTATCGCATTCAACATAAGACCATTGGTTACATAAGATGTTGTAAACGTAAATTTAAACATCGTGGAGCCGTAATGGAACATATACTAAGACATTTAAATCCCGATGcatacaaATGCACGATATGCCAAAAAAGCTATTCCgataaatttacatttcaaaatcATATTCGAACTCATGATCCTGATCAAGTGAAACCGTTTAATTGTGAGATATGTCCAAAAagttttacaaaacaatttttattgaatcaTCACAAAAAACATAGACATTGTACAGCCGCCGATAAGAAATTCGTATGTGATATTTGTGAAAAAAGTTTTATATCTAAATCAATTTTAACGTCACACATAAAAGGTGTACACGAAAATGCCTATTCTCGAATCTGTGAAGTATgtgcaaaaatatttaaaagtaaacAGATTTTTGAATATCATCGGAAATCCCATTTTTCTGGGAATATTCTACCAAAGATGCAGTGTAATTTATGTGGTGCATGGTTAACCAATAAGGATTCATTACGTAACCATATCGCTAGACATAAAGATACAAAGCATGCATGTCCACAGTGTGGCAGAGAATTGTCAAATCGTGGCGCGTTACGAGATCATATACGTTATGTACATAAAGAGGCCAGTCATATTTGTACCATATGTTCGAAAGGATTCAAACATCCGCAAAGATTAAAGGAACATATGTCATCGCATACCGGTGGTGCCCTTTACACATGTTCATATTGTCCGAAATCTTTTAATTCTGGTGGCAATATGTATACACATCGTAAAAAACTCCATCCCGTTGAATGGCAAGCAGATAGAGagaaaataaagaatttaaataatgcaaTGGTAATTAGTAACATTACTTAA
Protein Sequence: MDQSKMCILCYNLLNDDKKIIYLSSDKKHLHFIKLDENVHNEITVKKEQSKCERKSVSNEPAVNIIDDVESTNITNLWIEEIHPDIHEYNSDDEKVTKTTKILNKPRLRSASIRNTVNTNPKQKNTKKHSKEIKKEQINSSGEHQASIVSNQMNVCTTTPIIIDRHLLETSSSRILIGECDAKNLNEIEKNIKDERENEQIREYFKMQCDLCEHTFKKLSEAKTHYRIQHKTIGYIRCCKRKFKHRGAVMEHILRHLNPDAYKCTICQKSYSDKFTFQNHIRTHDPDQVKPFNCEICPKSFTKQFLLNHHKKHRHCTAADKKFVCDICEKSFISKSILTSHIKGVHENAYSRICEVCAKIFKSKQIFEYHRKSHFSGNILPKMQCNLCGAWLTNKDSLRNHIARHKDTKHACPQCGRELSNRGALRDHIRYVHKEASHICTICSKGFKHPQRLKEHMSSHTGGALYTCSYCPKSFNSGGNMYTHRKKLHPVEWQADREKIKNLNNAMVISNIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -