Dfeb018281.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284472.1:37055485-37058760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.1e-05 0.0029 18.3 1.0 2 20 175 193 174 196 0.91 2 10 0.00058 0.033 15.0 1.0 3 23 303 323 301 323 0.97 3 10 1.5 86 4.3 1.5 1 23 383 404 383 404 0.86 4 10 0.0012 0.071 14.0 0.2 1 23 411 434 411 434 0.97 5 10 0.0046 0.26 12.2 1.2 1 23 460 482 460 482 0.97 6 10 1.4e-05 0.00081 20.1 5.7 1 23 488 510 488 510 0.98 7 10 0.019 1.1 10.2 5.4 1 23 516 538 516 538 0.96 8 10 0.00011 0.0065 17.2 0.4 1 23 544 566 544 566 0.97 9 10 3.7e-05 0.0021 18.8 0.0 1 23 570 592 570 592 0.97 10 10 5e-05 0.0028 18.4 0.3 1 23 601 623 601 624 0.95
Sequence Information
- Coding Sequence
- ATGGATAACGACGATTAttatgttgatgatgatgatgatatggATGAATCAATACCAATAATTTTAGGTGGTGTCATCGGCGATGATGAACAGCAACAATTATTACCACACCACCatgatttaataaacaatgttccatatgaatgtaaaacagaaaaagaaattgaatatGTTAATGTTGAACATATTTTTGAAGAAGTTTATTTAGAAGATCATTCAACACCGGATGAAGCTGAAAgtgaaaatgattattataccGTTTTAAATATTGCCGACACTTTCGAAAATGGAGAAGAAAAGGAAGGAGAACAATctaatgatttatataattgtagtAAATGTTTAATACAATTAACATTTACAGATATTCAAGatcacataaaaaattaccataaaaatgaaaaagtttTACTTGATATGGAGGAAGAATCAATAACTGAAACAAATGAATGGTCGGATGTGCTTAATAGTGAAAGCAATAATGATACAGAACGTTTTAATATCGAAAAATTAACACAAATCGAATGTAATATTTGtcagaaaaaatttaaaaataaacgatCATTAACTAACCATTTACCAATGcataatagaaaaaaagatACCTTATTAGTGGTGAaccacaataataataataataataataataataataataataataataataataataataataataataacaacaccaacattattattaacagcaaacaaagtaataataataatgctgATGATATTATTCTAGAACAACAATCAATGAAAAAGCCTATACGAAGACCTTACATTAAGAAAAACTCCGGCGTAGCTATTAATAAAATTcctataaaaaaatcaaaaaaaaagaatagcAAAACAATCAACCAATTGACGGCCGAAGAGGAAAagataaaatcaaattgtaatatttgtaataCACAATTTCAAAGTCAAAAGGGATTattattacATATGAAAATGCATCAACCACATAAACAGAGATCATTTCAAGATTTTCTTGATAAACGTGATGGTGTAaatgatagaaaaaataattatggtGATGATTTAACAATCCGTAACAATCATCctgatgatgacgatgataatgatggtgatgatgataatggtgatgaaaagaaaatggaaaaaaaattacaattttattgtgaattatgtagtaaaagCTATGATAAAACATTTGAAACAATCCATTTACGAATGCATTCAACGGAAACAATGGATTATGTTTGTAGtcaatgtaatataaattttgatgatgaaaaatcactatcaatgcatttaaatattgttCATCAAGAAGGACGTATTATGGGACAATCAAAACATCCGTCTGCATTAAGAATTGGTGATGATTCCGTTAAACGTGAATATGCGTGTACGTATTGTGGTAAAGAATTTTTACGACCTCATGAAAAAGTCAAACATGAACGTattcataccggtgaaaaaccaCATAAATGTGAAATTTGTGGTAAACGTTTTCGGGTAACCTATTGTTTAACATTACATATGCGAACGCATACAACAGATCGTCCATATGTTTGTATCCATTGTAATAAAAGATTTAAATCGAATTCCGTTTATTCACATCATTTATTAACACATTCGGATGTACGTGCATTTGCTTGTCCATTTTGTCCGAAACAATTTAAAACCCAAGTACAATTGGCTGGCCATAAGAATAGTCATACAAAACCGTTTCCATGTCCAGAATGTAATCGTCCGTTTGCTACACTGTATGCTGTTCGAGCACACATGACTGTACATTCAAAGTCCAATCATAATTTACGGTATGCATGTGAGATTTGTGGTGCAACGTACGCTCGTAGTTTTGCATTAAAAGATCATATAAAAGAACATCATCCAAATGCTAAGATAACCACAACGGgaacagcaacagcagcagcaacaggACAAGAAACAacagcatcatcatcaacaattaCAAATCTGGTTGATGAACTACATTTACAATCGGAAATATTCAATGATGatagtaaaaataatcatattgaTAATCAATCAtcattacaacaacaacaacaacaacaaccattGAGAAAATTACGATCTTCATCGTCGTCTATTGTAAAACcgaaaaaatcatcaaaaagaaataataaaaaatcacatactacaaatatacaatcatcatcatcacaatcaaTAGCATTTGATtcaacatttaatttattaacgGGTGATCATCGTCACAATTTCGTGGACAGTACAATAAATGATTATGGCAGTGGTGGTGATTTACAACCGGAAGTTGTTAATGATGAACCAATTATTGTATCTATTATCACCGATGAATTACCGATTGAACAATCatcaaatATGAAATCcaatgaattttctacaattaATGATAATGTTCAAACGACAATTCCAGATTTTGAAGAAATTACatcattcatttaa
- Protein Sequence
- MDNDDYYVDDDDDMDESIPIILGGVIGDDEQQQLLPHHHDLINNVPYECKTEKEIEYVNVEHIFEEVYLEDHSTPDEAESENDYYTVLNIADTFENGEEKEGEQSNDLYNCSKCLIQLTFTDIQDHIKNYHKNEKVLLDMEEESITETNEWSDVLNSESNNDTERFNIEKLTQIECNICQKKFKNKRSLTNHLPMHNRKKDTLLVVNHNNNNNNNNNNNNNNNNNNNNNNNTNIIINSKQSNNNNADDIILEQQSMKKPIRRPYIKKNSGVAINKIPIKKSKKKNSKTINQLTAEEEKIKSNCNICNTQFQSQKGLLLHMKMHQPHKQRSFQDFLDKRDGVNDRKNNYGDDLTIRNNHPDDDDDNDGDDDNGDEKKMEKKLQFYCELCSKSYDKTFETIHLRMHSTETMDYVCSQCNINFDDEKSLSMHLNIVHQEGRIMGQSKHPSALRIGDDSVKREYACTYCGKEFLRPHEKVKHERIHTGEKPHKCEICGKRFRVTYCLTLHMRTHTTDRPYVCIHCNKRFKSNSVYSHHLLTHSDVRAFACPFCPKQFKTQVQLAGHKNSHTKPFPCPECNRPFATLYAVRAHMTVHSKSNHNLRYACEICGATYARSFALKDHIKEHHPNAKITTTGTATAAATGQETTASSSTITNLVDELHLQSEIFNDDSKNNHIDNQSSLQQQQQQQPLRKLRSSSSSIVKPKKSSKRNNKKSHTTNIQSSSSQSIAFDSTFNLLTGDHRHNFVDSTINDYGSGGDLQPEVVNDEPIIVSIITDELPIEQSSNMKSNEFSTINDNVQTTIPDFEEITSFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -