Dfeb002521.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- grau_4
- Assembly
- GCA_958336335.1
- Location
- OY284468.1:18160292-18165545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.18 10 7.2 1.3 2 23 197 219 196 219 0.97 2 19 1.2 68 4.6 0.3 6 23 228 245 228 245 0.97 3 19 0.00016 0.0092 16.8 1.5 1 23 251 273 251 273 0.98 4 19 0.00054 0.031 15.1 7.0 1 23 281 304 281 304 0.98 5 19 2.6 1.5e+02 3.5 0.1 1 23 313 337 313 337 0.88 6 19 0.00067 0.038 14.8 1.0 1 23 344 367 344 367 0.96 7 19 0.079 4.5 8.3 0.4 2 23 376 397 376 397 0.97 8 19 0.0051 0.29 12.0 0.8 2 23 403 425 402 425 0.96 9 19 0.019 1.1 10.2 0.4 1 13 432 444 432 445 0.91 10 19 2 1.1e+02 3.9 1.7 2 23 644 666 643 666 0.95 11 19 6.1 3.5e+02 2.4 0.5 6 23 675 692 675 692 0.97 12 19 4e-05 0.0023 18.7 1.3 1 23 698 720 698 720 0.98 13 19 0.0066 0.38 11.7 2.1 1 23 728 751 728 751 0.97 14 19 0.035 2 9.4 1.3 1 21 759 779 759 782 0.92 15 19 0.12 6.7 7.8 0.1 2 23 789 811 788 811 0.94 16 19 0.16 9.4 7.3 1.4 2 23 820 841 819 841 0.97 17 19 0.12 7.1 7.7 1.1 3 23 848 869 846 869 0.92 18 19 2.4e-05 0.0014 19.4 1.3 1 23 874 896 874 896 0.97 19 19 8.2e-05 0.0047 17.7 2.1 1 23 902 925 902 925 0.98
Sequence Information
- Coding Sequence
- ATGAGTATTTGTTGTTGTGTGTGTTTAACAAAATGTGAAGATTCAATTGAAatctTACAACCGGATCGTGGTTCGTCGTCACCGATAATTTGTAAGATTTGTTGGTCAAGCATTAAAacatttcataaattttatgttgGAATTGAAACGATccatcaaaataatataccagGGCATTTTTTACTAATACCGCCACCAGACGAAGTCGACGTTGATTCTGTTCCAGATTTAAAACAAGATTATAGCAATGATaaattacaacaaaataataataataataaaatacataatggTTTGAAAAATATTACTTGTGAcgaggatgatgatgatgattatattgCACAACAGGCATTAAACAACGATCGAATTGATCCAATTGCAGAAGTTTCAAAAACGGATattgtttatcatttaaaaactAAATCGGATCGAGGGAAGCGTAAAAAACTGCCGAAACAAAATGTGAAATTGAATAAACTTTCGTTAGCAGATAATTTAGTACACAAGAATGAAAAATTGGAAAAGCGTAATGTGAACATTGAAAAATCTATACAAGAAGCTAATGAAGTACGTCAgtattttgaaatgaaatgtgAATTATGTAATACAACATTAGACTCATTATCGGATGCACATCAACATTATCGTAAAgcacataaaataaaaggatatttAAAATGCTGTGGACGTAAATTTGTACAACGGTGTAGTGTACTCGATCATATTGCATATCATTTAAATCCCGATATTTATAAATGTACCATTTGCAATAAATCATATCTCAGTAAAAGAAGTTTAAGTAATCATATGGAAATACATTTACCAATCGAATctaaacaatataaatgtCATTTATGTACCCAATCGTAtgcaaaaaaatgtaatttaacaCATCACATACGAATTGGTCATCGTTTAGATAAACCAGATAAAAGTTTCTTATGtgatatttgtaataaatggTCTTATTCAACAAAAGGAATTTTGGCAGCAcatatattttccattcattTATTACAATCAATTTCTCATGTATGTGATATATgtgcaaaaatatttaaaagtagAAGAGCATTAAATGATCATCGATCACGAgaacatttaaatattgtgGAACCGCGTGCCCAATGTAATATGTGTGGATCATggttaaaaaattatgatggTTTACGAAAGCATATGATTCGCCATAAAAATGGACCACAAACTTGTTCACATTGTGgtaaaattaaaccaaataaaGAAGCGCTAAGGGATCATATACGAAATGTACATCAAACCGTAACAGAATGGCATACATGTTCAATTTGTAATAAGTCATTTAAAAGAGCAATTATTTTAAAGattttaGAACCTGATGCATCCTGGAATACATCTTCATCAATGACAATAATATGTACAAATTGTTGGTTGACCCTAGAggaatttcataaattttaccGAAACATTGAGATGGTACATGGAAAAGgtcatttaatattatttcctACCATAGAAATTGATACAAAATCACCATTATCACCactgaataataataataatacgttAAAGAATGATAgtgataatgaaaaaaatcagATTTTAAAGACAATAGTTTTAGATTCGATGAGTGTGAATGAATTGAATGATAAGGATATTTTAgaaaaagatttaaatttaaatttagaaGATAAAAAATGTGATGAAAATATAGTACCTTGTGATGCAGATACGATTGTTATGAAAAATGATCGTTTAGTGAAAAATAGGAGGttatttgaacaaaaaattacTGAGTCAAATGAATCAtccaataataatagaaaGAAATATGTCCGACTGTCGTTGGGCGAACGATTAGCTATACAACATGaaaaacaagaaaaaaaaagtctgATTCAAGAGAAATGTGAAGAAGAAGCATATGAAATGCGACAATATTTTGATATGAAATGTGatttatgtgaaaaaaaatgtgaatcGTTAATGGACTCACAACAACACTATCGAATCGTTCACAATACAAAAGGTTATTTGAAATGCTGTGGacgtaaattttttaaacgtGGTATGACACTGGAACATATCAAATACCATTTGAATCCCGATGCatataaATGTACCCTTTGTTTTAAAACATACATTGACAgaaaaggattaaaaaatcatatggaAGTGCATGTACCGGTGGAATCAAGACAATTTAAATGTGATATGTGTACATTATCATTTGcaaaactaaataaattatcacaACACAAACGTTTACGGCATATtgatagaaatataaaaaatttcatatgcGATTTGTGTAATAAATCATATTCAACAAAGGTGATCTTGGGAACGCATATGCGTTGTGTTCATTTAGCCGTATTTCGTCAAGTATGTGATATTTGTGCCAAAGTATATAACAGTAAAAAAGTATTGGATGATCATCGAGCACGtgaacattttaatatagttGAACCACCTGTTCAGTGTAATATTTGTGGATCTTggTTAAGGCATATTCAAAGTTTAAAAAAGCATATAAAACGACATAGTAATATTCCACAAACTTGTATACATTGTGGTAAAATTAAACCAAGTAAACAAGCATTAACTCAGCATATGCGTTCGGTGCATGTATCAGAATCCCATTCATGTTCAATTTgtgaaaaatcatttaaaaaagcTATTTCATTAAAGGAACATATGGCATCGCATACCGGTGAATCACTTTATACATGTCCATATTGCCCGAAAACATTTAATTCTGGTGCAAATATGCATTCCCACCGTAAAAAAATCCATCCGATTGAATGGCAGAATGCTCGATTAAAACGTTATTATTTCCAATCAcaagaataa
- Protein Sequence
- MSICCCVCLTKCEDSIEILQPDRGSSSPIICKICWSSIKTFHKFYVGIETIHQNNIPGHFLLIPPPDEVDVDSVPDLKQDYSNDKLQQNNNNNKIHNGLKNITCDEDDDDDYIAQQALNNDRIDPIAEVSKTDIVYHLKTKSDRGKRKKLPKQNVKLNKLSLADNLVHKNEKLEKRNVNIEKSIQEANEVRQYFEMKCELCNTTLDSLSDAHQHYRKAHKIKGYLKCCGRKFVQRCSVLDHIAYHLNPDIYKCTICNKSYLSKRSLSNHMEIHLPIESKQYKCHLCTQSYAKKCNLTHHIRIGHRLDKPDKSFLCDICNKWSYSTKGILAAHIFSIHLLQSISHVCDICAKIFKSRRALNDHRSREHLNIVEPRAQCNMCGSWLKNYDGLRKHMIRHKNGPQTCSHCGKIKPNKEALRDHIRNVHQTVTEWHTCSICNKSFKRAIILKILEPDASWNTSSSMTIICTNCWLTLEEFHKFYRNIEMVHGKGHLILFPTIEIDTKSPLSPLNNNNNTLKNDSDNEKNQILKTIVLDSMSVNELNDKDILEKDLNLNLEDKKCDENIVPCDADTIVMKNDRLVKNRRLFEQKITESNESSNNNRKKYVRLSLGERLAIQHEKQEKKSLIQEKCEEEAYEMRQYFDMKCDLCEKKCESLMDSQQHYRIVHNTKGYLKCCGRKFFKRGMTLEHIKYHLNPDAYKCTLCFKTYIDRKGLKNHMEVHVPVESRQFKCDMCTLSFAKLNKLSQHKRLRHIDRNIKNFICDLCNKSYSTKVILGTHMRCVHLAVFRQVCDICAKVYNSKKVLDDHRAREHFNIVEPPVQCNICGSWLRHIQSLKKHIKRHSNIPQTCIHCGKIKPSKQALTQHMRSVHVSESHSCSICEKSFKKAISLKEHMASHTGESLYTCPYCPKTFNSGANMHSHRKKIHPIEWQNARLKRYYFQSQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -