Basic Information

Insect: Dilophus febrilis
Gene Symbol: -
Assembly: GCA_958336335.1
Location: OY284470.1:42231981-42234752[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00086 0.049 14.5 0.8 2 23 183 205 182 205 0.96

2 10 0.0015 0.084 13.8 2.1 1 23 327 350 327 350 0.91

3 10 0.00013 0.0073 17.1 0.4 3 23 357 377 355 377 0.97

4 10 1.3e-05 0.00075 20.2 0.6 1 22 385 406 385 406 0.96

5 10 0.00038 0.022 15.6 3.8 1 23 432 454 432 454 0.98

6 10 0.0062 0.35 11.8 1.4 1 23 460 483 460 483 0.91

7 10 2.2e-05 0.0013 19.5 1.7 1 23 489 511 489 511 0.96

8 10 1.5e-05 0.00084 20.0 3.0 3 23 519 540 517 540 0.96

9 10 5.4e-06 0.00031 21.4 0.5 1 23 546 568 546 568 0.99

10 10 0.00027 0.015 16.1 1.5 1 23 573 596 573 596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00086	0.049	14.5	0.8	2	23	183	205	182	205	0.96
2	10	0.0015	0.084	13.8	2.1	1	23	327	350	327	350	0.91
3	10	0.00013	0.0073	17.1	0.4	3	23	357	377	355	377	0.97
4	10	1.3e-05	0.00075	20.2	0.6	1	22	385	406	385	406	0.96
5	10	0.00038	0.022	15.6	3.8	1	23	432	454	432	454	0.98
6	10	0.0062	0.35	11.8	1.4	1	23	460	483	460	483	0.91
7	10	2.2e-05	0.0013	19.5	1.7	1	23	489	511	489	511	0.96
8	10	1.5e-05	0.00084	20.0	3.0	3	23	519	540	517	540	0.96
9	10	5.4e-06	0.00031	21.4	0.5	1	23	546	568	546	568	0.99
10	10	0.00027	0.015	16.1	1.5	1	23	573	596	573	596	0.96

Sequence Information

Coding Sequence: ATGCTAATTTGCAGtttaaatGGAACATGTCGATTATGTTTAAGAAAtgatcaattattattattatgtccAATTTTTGATGGAACAAATCCTCAACAATCAGAAAAGATTTCAACAATCATTGATAATACATTAAAAGTTTCCATTCaacaaaatgataaattacCACAGAAAATTTGTAATGTATGTACggaatttttgtataaaattgatCAATTTCGTAATGATTGCTTGAAATCCCAATTGATTttacaacaatattttattattaataataataatactgataatgataatgataattgTCAACCATCAAATGATATTGAAGACGAAAATACTGAAAGGGATCATGGAAATAATCGAATTGATGATATCACTGACAATACAATGGAAAGACCATCAGTTATCGAACAGATGAATATCAAGAAAAGTGTAAATGCGGAATTGATTGATCGATCAGAAATAACAGAAATGTTACCTAAAAGTACAAATACAACGATATCGACTAAcgatattgatattgatattgataatcccaatgaaaaaaaatgtgattattGTTCAATGGTTTATTCTAATATGAAAGAATTAAATgaacacataaaattaaggCATCCAAATCAACGACTTCATTTATgcatttattgtttaaatacatttaatacaaAACGATCTATGGAAATGCATATAGCCGAACAGCATCATCGTCCGCGGGCGTATCATAACAGTTTAGATATAAAGCAGCAAgcaaaaaaatcatcatcaacaattgTGCGGTTAACACCAACAGTAGCAACACCAACAACGCCGATACGAACTACAGTTACAACTACAGCCGGTATACAGTCGTCTGTAAAGCGtgtgttaaataaatttaaacatcCAAATAATTGCCGATTTTGTTTGGAAACATTTCCAAATTATATTGAACGTTTAGCGCATGAAGAACGATCGCATAGTGAACGaactaaatataattttctgtgTAGTATTTGTGGAaaagGTTTTAGAGATCAAAAATCATTTGATAGTCATTCAAAACATGCACATGATAATACTAAAATGAATTGTGAAATTTGTAAAAAACCATATTATAATCACAGAGCATTGATCGCACATATGGCGACACATCGTAAATCGCGTGTACCACTTTTTTCATGTAAAAATTGTGATAAAGTTTATACCAATGAAAAAgcattaaaaattcatatgaaacGTGATTACAACGGAGGAAAACGATGTAAAGTAAAAGGAATGGAACCAAGGGACACTAAATCAATGCCTCCGATATCATTTACTTGTGAATTATGCAATGAAATATTTCACTTTAAAAGACAATTAAATGATCATATGAAGAGGCATCAACCCGAATGTAAATTTGAATGTAAAATTTGTGGTAAACGATATTCATTAAGATCACGTTTAACTTTTCATGAAAAAAGTGTTCATCAACGTTTGAAACCGCATAAATGTGAGGTGTGTCATAAAGGATTTAGTCGACCGGCATCATTAAGAATACATAATCTGGTGCATTCGAGGAATAAACCATTCGGTTGtacaaaatgtaataaatcTTTTGCACAAAAAcgacatttaaaaaatcaccaaaTTGTGATGCATACCAATGAGaaacaatttaaatgtttaGAATGTGGTCGATCATTTGATTTAACAGATGAATTAACTAATCATATGCAAATGCATACCGTACGACCATTTCAATGTCAATATTGTGTTAAAGATTTTCGAACGAGAAAGGGGCTAAAGGTCCATTCGGAAACAATGCATTTAATGGgagatgatgatgaatatacaaattctTAA
Protein Sequence: MLICSLNGTCRLCLRNDQLLLLCPIFDGTNPQQSEKISTIIDNTLKVSIQQNDKLPQKICNVCTEFLYKIDQFRNDCLKSQLILQQYFIINNNNTDNDNDNCQPSNDIEDENTERDHGNNRIDDITDNTMERPSVIEQMNIKKSVNAELIDRSEITEMLPKSTNTTISTNDIDIDIDNPNEKKCDYCSMVYSNMKELNEHIKLRHPNQRLHLCIYCLNTFNTKRSMEMHIAEQHHRPRAYHNSLDIKQQAKKSSSTIVRLTPTVATPTTPIRTTVTTTAGIQSSVKRVLNKFKHPNNCRFCLETFPNYIERLAHEERSHSERTKYNFLCSICGKGFRDQKSFDSHSKHAHDNTKMNCEICKKPYYNHRALIAHMATHRKSRVPLFSCKNCDKVYTNEKALKIHMKRDYNGGKRCKVKGMEPRDTKSMPPISFTCELCNEIFHFKRQLNDHMKRHQPECKFECKICGKRYSLRSRLTFHEKSVHQRLKPHKCEVCHKGFSRPASLRIHNLVHSRNKPFGCTKCNKSFAQKRHLKNHQIVMHTNEKQFKCLECGRSFDLTDELTNHMQMHTVRPFQCQYCVKDFRTRKGLKVHSETMHLMGDDDEYTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -