Dfeb014813.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284471.1:22121899-22126047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.03 1.7 9.6 2.8 1 23 396 417 396 417 0.93 2 12 0.077 4.4 8.4 2.0 1 23 440 463 440 463 0.98 3 12 0.018 1 10.4 0.1 2 23 500 521 499 521 0.96 4 12 0.19 11 7.1 1.3 2 23 573 596 572 596 0.91 5 12 7.5e-05 0.0043 17.8 4.7 3 23 600 620 598 620 0.96 6 12 4.1e-06 0.00023 21.8 0.1 3 23 627 647 626 647 0.98 7 12 5.7e-06 0.00033 21.3 0.1 1 23 652 674 652 674 0.96 8 12 0.00016 0.0093 16.8 1.5 2 23 680 703 679 703 0.97 9 12 4.9 2.8e+02 2.7 7.6 1 23 826 848 826 848 0.97 10 12 3.7e-05 0.0021 18.8 0.3 3 23 855 875 854 875 0.96 11 12 6.3e-07 3.6e-05 24.3 2.2 1 23 879 901 879 901 0.98 12 12 0.11 6.1 7.9 0.4 1 21 906 928 906 933 0.93
Sequence Information
- Coding Sequence
- atgggtgatttatttaaatgtggtAATTgtaaagatatttatattgatttatttgaatttcttGATCATAAATCACAATGCGTTAATACATCATGTGAAAGAACATTATCAATTACCACAATCGGAACatcaacaataacaaaaacatcatcaataataccaacaacaacaacaaccaccacAGAGATTGTAAATCCTATAATTATAAATCCACCCATAACAAATTTCCCAACATTACATtatgaaaattcattgattGACATTCCaaattcaatttcaacaataaaaactttaaatctaaaacaacaacaacaacaacaactggaacaacaacaacaacaacaacaacaacaatcacaatATCCACCTGTAATAATACAAAGTACAAAATTGAATccaattcaaaaatattatagtaatcCAAGGATAATTATTTCAACCAATCAACCAATAATtgaacaacatcaacaacaacctCAAATCATCGAACAGCAaccgcaacaacaacaacaacaacaacaaaatcaaactcaacaatcaataataaattaccattcaattaataatattaataatataatacatcaAAATCAATCGCAATCGCaatcgtcatcgtcatcatcaccaaaaacaataattgatatacaaccaataataattcatactgaatataaaaaacaacaacaacaacaacaacaacaacaacaaccaaaaactataaaatgtattaaaaaaataacagatataaaattgtttacaaaTAAGGTAAATTCACAACAATTAATCGGTAATAATTATCCAATAATAACTGATATAACAGATATTTTACAATCCAGTCCAGTCGCTATTGAACCTTTAAAGTcaatatcaacaacaacaacaacagctaCAATACCATTaacaaatattcaaaatataaaatcaataaaaaaacctcgttgtaataataataataataatagaaaaaaatccaTAACAAACGATCGTAAtactgttgttgttgttgttaataGCGATGATAATGGCcgtaaaaatgtaattgaaaataacagaattatagaaaatatagtaacaacaacaacatcaccaccaccaccaccaccgatCATCAAAAAACCTAAACGTCAACGTAAACTAATAATACGAATGAATCCGGATGAGGAGAAATTAGTGAATGGACGACGATATCAATGTCCGGTGTGTGGATGTCGTTTTTAtcgtaataaaattaaaggtCATATGTCAACGCATTTAGTATGGCCCGAAACGTTAACACAAAGTTTAGGTACGGGTAATTATGATTTGACAGAGGGTAACTACCGTTGTAAATATTGTTCAATTGGCATtgaaacatttataaaattgcgAACGCATATGCATACTGTACATAAAAATGTACGATTGTATATGTGTCCGATGAGTGCATGTCGTCAATTGTTTGCCTATGAAGATTTAATCATTGAACATAGTCAACGGTGTGCCTTTCAATCGCCGATAAAATGTCCGATATGTTTTCGATACTTTAGCGCTGCCACCGAATTGGATATTCACCTAATggaacataataataatattaataataaaaaatacggTCGACGACAGACgacaaaaattgaaaatgaatcaATAAATTTGGAAGATATAACAAAACCTTTATTATCAAGCAATAATAATGATGGTGACGTTgataatagtaataaattaCCATCCAGTACTCAATGTCCaatatgttttgttaaatataaaaatgaaattcgATTGTTAAAACATTTACATACCGATAATCATGAACATTTATGtgaaatttgtaataaaatgtttatgcaTAATCGAGCGCTTACCAAACATTTACGAACGCATCGTGATTACAAACGAATTTGTCCGGTATGCAATAAGTCATTTAGCGTTCAGGCATATTTAACGGCTCATCTATTAACGCACACCGGTCGTCAATACATTTGTGATATATGCGGAAAGGCAACAACGCGTAAAGATAGTTTAGCCCGTCATTTGGTCATTCATCAATTTCCATTAAAACGTTGTCCATTTCAGGGGTGTAACAAATTGTTTCGTCGTTCGGATCTCTTTCGAGCCCACCAAAATACCCACAAAATACCCAAGGCGAAATTAGatggTATTCCATtgaaatatagtaaaaattgtaaaaaaataaccaaaaccACTACTGCAAccattaatgataataaaattgatagtAAACGTCTTAAAAGTAAATCGTCTCATCCGTATTTAAAGCGAAATGTTATAATACCTGGAATTGTTGTAAAAAGTGGTAAAATTACAAAagAAATGATACCCGtagaaattgaaaaaaagaaacaattaaacaaaacagaaaTTATGGATTATGGTAGTGAAGATGCAAATGAATTAATCCcgaataatacaataataataaaaactcaTGGAATGCAAACAAGAGGTAAAcgtCATATGACAAATGAAACACATAATCATAAATGTTTGTATTGtgataagaaatatttaacaataacaaaattcCATAGGCATACGTTAACGCATCGACGTACACCGAAAATTTGTCATATTTGTGGTAAAATATTTACCGTTCAAGCCTATTTAAATTCCCATTTATTGGCGCACACCGAATCGTTTACCTGTGACATTTGTCAACAAACATTTACCCGTAGAGATAGTCTGACCCGGCATCTAAATCGTCATAGACAACCATTGTACGTTTGTACGCATACCGGTTGTAAGGCTGTTTATCGACGTAAAGATTTAATTGTACGTCATTTGCTAAAAAATGATGCacataaaatgttaatttattga
- Protein Sequence
- MGDLFKCGNCKDIYIDLFEFLDHKSQCVNTSCERTLSITTIGTSTITKTSSIIPTTTTTTTEIVNPIIINPPITNFPTLHYENSLIDIPNSISTIKTLNLKQQQQQQLEQQQQQQQQQSQYPPVIIQSTKLNPIQKYYSNPRIIISTNQPIIEQHQQQPQIIEQQPQQQQQQQQNQTQQSIINYHSINNINNIIHQNQSQSQSSSSSSPKTIIDIQPIIIHTEYKKQQQQQQQQQQPKTIKCIKKITDIKLFTNKVNSQQLIGNNYPIITDITDILQSSPVAIEPLKSISTTTTTATIPLTNIQNIKSIKKPRCNNNNNNRKKSITNDRNTVVVVVNSDDNGRKNVIENNRIIENIVTTTTSPPPPPPIIKKPKRQRKLIIRMNPDEEKLVNGRRYQCPVCGCRFYRNKIKGHMSTHLVWPETLTQSLGTGNYDLTEGNYRCKYCSIGIETFIKLRTHMHTVHKNVRLYMCPMSACRQLFAYEDLIIEHSQRCAFQSPIKCPICFRYFSAATELDIHLMEHNNNINNKKYGRRQTTKIENESINLEDITKPLLSSNNNDGDVDNSNKLPSSTQCPICFVKYKNEIRLLKHLHTDNHEHLCEICNKMFMHNRALTKHLRTHRDYKRICPVCNKSFSVQAYLTAHLLTHTGRQYICDICGKATTRKDSLARHLVIHQFPLKRCPFQGCNKLFRRSDLFRAHQNTHKIPKAKLDGIPLKYSKNCKKITKTTTATINDNKIDSKRLKSKSSHPYLKRNVIIPGIVVKSGKITKEMIPVEIEKKKQLNKTEIMDYGSEDANELIPNNTIIIKTHGMQTRGKRHMTNETHNHKCLYCDKKYLTITKFHRHTLTHRRTPKICHICGKIFTVQAYLNSHLLAHTESFTCDICQQTFTRRDSLTRHLNRHRQPLYVCTHTGCKAVYRRKDLIVRHLLKNDAHKMLIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -