Dfeb015097.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284471.1:26934831-26938547[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00024 0.014 16.2 0.4 2 23 179 200 178 200 0.95 2 13 0.013 0.74 10.8 1.5 2 23 213 234 212 234 0.97 3 13 0.00036 0.021 15.7 7.1 1 23 240 262 240 262 0.98 4 13 4.8e-05 0.0027 18.4 1.2 1 23 267 289 267 289 0.97 5 13 0.00012 0.007 17.1 1.6 1 23 295 317 295 317 0.97 6 13 0.034 1.9 9.5 4.3 1 23 323 346 323 346 0.91 7 13 0.018 1 10.3 0.3 2 23 609 631 608 631 0.95 8 13 0.00037 0.021 15.6 2.2 2 23 639 660 638 660 0.96 9 13 0.0027 0.16 12.9 0.3 1 23 670 692 670 692 0.97 10 13 0.00019 0.011 16.6 2.4 1 23 698 720 698 720 0.98 11 13 3.8e-05 0.0022 18.7 1.3 1 23 725 747 725 747 0.96 12 13 5.9e-05 0.0034 18.2 2.0 1 23 753 775 753 775 0.97 13 13 0.0021 0.12 13.2 4.0 1 23 781 804 781 804 0.97
Sequence Information
- Coding Sequence
- ATGATTAAAGGAAATGATAAAGATTGGAAAACTTGGTGTCGTACATGTGGAGACAAACATAATACagaatttgaaaatgattttgttaaaTGGGAATCGATCGATCAAGATTTATTGGAAAACATTAGAAAGCTAACCAATTTAGAAACGTTACTTAAACATGAtggttttatttgttttgattgtcatgcatttttaaaagaaatgcAAAAATTCTCATATCGTTgtgttaaaattaatgaaatgtTTACCGAAATCCATTTGGATTACAAACGTTTTGAACAGAGCGATCTTGTAACGGTACGTTCACGTTACGGATTAAAAGATATTGTTATGCAGaATTTAAATAGCAACTCGCCTAAGAAGAATAATTATGAAACtgtggaaaaaataaaaatggaaacGGATGAATTATCAaaggatattattattaatgaagagaatttaattatatgttatgCTGATGTTAAAGATGAAGTTTTTAAGCAAAAGATTAATGTtaatgaaaaacatataaaagaaaaccGTTATTTGTATTGTTCAAAATGTCCAAAAAGATTTACCACTTTACGTGGATTAAGGATTCAtgaaattattcatttatcaGGTTATAAAAAACCAGACAAAGATCCAGTGGTATGTGAACAATGTGGTAAATGTTGTTTATCCAAAGGTGCTTTAAGTGAACATCAAGCAACGCACAGCGCTGattgtgtatatgtatgttCAAAATGttctaaaaaatttaaacattcaTATCGTTTACATGttcatatgaaaatacataaagaaattgcatttatttgtGATACTTGCGGTCAACGATTCAAAACAAAACGTACAATAACTCAACACATGCTTGTACATTcggaatataaaaaattcaaatgtaaatattGTGGAAATGAATATAAACGTGCAAGAACATTAAAGacacatttaattttacataccGGTCAGAGACCATATAAATGTCCATTTTGTGATAAATCATTTACATATGGTCCAAATTGTCGTTTGCATAAGAAAAAGTTACATCCTAAAGAATTGGCTGAAATGGAAGCATCCGGTGAAGttcatataacaaatttaccaaaaatcgGAAATGATGAAGTTTGGAAAACTTGGTGTCGTACATGTGGAAACAAACATAATACAGAATTTGAAGATGATTTTGTTAAATGGGAATCGATCGATCAAGATTTATTGGAAAACATTAGAAAGCTAACCAATTTAGAAACGTTACTGAAACATGATGgtattatttgttttgattgtcatgcatttttaaaagaaattcaaaAATTCTCATATCGTTGTGctaaaattcataaaatgtttACCGAAATTCATTTGGATTACCAAAGTTTCGGTGAAAGTGATCTTTTAACCGTACGTTCACGTTATGATTTGGATAATGAACagATATCATTCGTTCAAATGCCGGATGCGACcaatataaatgatttgttaaaaattgaaattaaattagaggtaaatcatgaaaatgaattgaatgacAATACTGTAAACGATCAATCAATGATTACAGTGGGAAATCGAGAACGTAAGTTggataaaaagaaaagaaaagaactGGAACCCGTTCGATTATTAGCAACAAAGTCGACAGGTGAAACGAGGAAACAGaacaaaattatgaaattagaAGAAGTGAATACCGAAGAgggtattttaaatgtaaacgTAATGATAAAagatgatttattaaaaaatgacgATCCGACTGATGTATTCAAAATAGGTGATTatgaaattgtaaaaaaagaaaaatataataataaacgtgGACCTAAACAGAAAACatGTTCAATGTGTagtttaaattttgaaaacaGTGCATTATATGAAGCCCATTTAAAAGCAAATCATACGAAAGATGAATGGCCAATGGTTTGTGAACATTGTACAAAACGTTTTACATCAATGCGTAATCTGAAATTACATGAACTTGTACATTTAACAAAGCATTCCGGTCCCGatccatatatatgtgaacaatGTGGTAAAGCGTGTTTATCAAATTCTGCACTGCGTGATCATCAGGTAGTGCACAGTGATGAACATCCATTTGAATGCGATAGTTGTTCAAGACgattcaaaaatttatatcaattaaagATTCATAAGAAAATACATGttggtattttatttgattgttcAATTTGTCAACGGCAATTTAATACACAACGAACATTAAAGCAACATATGGTCGTACATTCCGAACAAAAGAAATACAAATGTAATTATTGTGGAAATGAATATAAACGATCAAAAACATTAAAGacacatttaattttacacaCTGGCCAGAGACCATATAAATGTCCATTTTGTGATAAAACATTTGTAAATGGTTCAAATTGTCGTAGTCATAAGAAAAAAGCACATCCTATAGAATTAGCCGAAATGGAAGCAACTGGTGAAGttcatataacaaatttaccaAAATTACGTGAATTACAACCGaagtga
- Protein Sequence
- MIKGNDKDWKTWCRTCGDKHNTEFENDFVKWESIDQDLLENIRKLTNLETLLKHDGFICFDCHAFLKEMQKFSYRCVKINEMFTEIHLDYKRFEQSDLVTVRSRYGLKDIVMQNLNSNSPKKNNYETVEKIKMETDELSKDIIINEENLIICYADVKDEVFKQKINVNEKHIKENRYLYCSKCPKRFTTLRGLRIHEIIHLSGYKKPDKDPVVCEQCGKCCLSKGALSEHQATHSADCVYVCSKCSKKFKHSYRLHVHMKIHKEIAFICDTCGQRFKTKRTITQHMLVHSEYKKFKCKYCGNEYKRARTLKTHLILHTGQRPYKCPFCDKSFTYGPNCRLHKKKLHPKELAEMEASGEVHITNLPKIGNDEVWKTWCRTCGNKHNTEFEDDFVKWESIDQDLLENIRKLTNLETLLKHDGIICFDCHAFLKEIQKFSYRCAKIHKMFTEIHLDYQSFGESDLLTVRSRYDLDNEQISFVQMPDATNINDLLKIEIKLEVNHENELNDNTVNDQSMITVGNRERKLDKKKRKELEPVRLLATKSTGETRKQNKIMKLEEVNTEEGILNVNVMIKDDLLKNDDPTDVFKIGDYEIVKKEKYNNKRGPKQKTCSMCSLNFENSALYEAHLKANHTKDEWPMVCEHCTKRFTSMRNLKLHELVHLTKHSGPDPYICEQCGKACLSNSALRDHQVVHSDEHPFECDSCSRRFKNLYQLKIHKKIHVGILFDCSICQRQFNTQRTLKQHMVVHSEQKKYKCNYCGNEYKRSKTLKTHLILHTGQRPYKCPFCDKTFVNGSNCRSHKKKAHPIELAEMEATGEVHITNLPKLRELQPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -