Dfeb011900.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:36892984-36899924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0032 0.18 12.7 3.3 1 23 179 201 179 201 0.96 2 14 0.00053 0.03 15.2 1.8 2 23 205 227 204 227 0.94 3 14 0.55 31 5.7 0.2 2 21 238 257 238 258 0.94 4 14 0.00017 0.0099 16.7 1.4 2 21 307 326 306 327 0.93 5 14 0.072 4.1 8.4 0.6 3 23 586 606 584 606 0.96 6 14 2.7e-05 0.0015 19.2 1.2 1 23 618 640 618 640 0.98 7 14 2.5e-06 0.00015 22.4 1.8 1 23 646 668 646 668 0.98 8 14 0.00085 0.049 14.5 1.7 2 23 674 696 673 696 0.96 9 14 0.0013 0.075 13.9 0.5 1 23 706 728 706 728 0.98 10 14 0.94 54 4.9 4.9 2 23 735 756 734 756 0.94 11 14 9.6 5.5e+02 1.8 0.7 9 23 765 779 759 779 0.85 12 14 5.2e-07 3e-05 24.6 4.7 1 23 785 807 785 807 0.98 13 14 5.8e-05 0.0033 18.2 1.0 1 23 813 835 813 835 0.99 14 14 0.00011 0.0064 17.3 1.9 1 23 840 863 840 863 0.98
Sequence Information
- Coding Sequence
- ATGAATGACTTATGGCAACGTGTAAAAGCAATAACTTCGGATACATGTAAACACCTCATGGAAAGTGTGCCACGACGTAATCAAGCCGTTATAAAATCCAAGGtTGAAATGCtttcaatatatgattttattgatGGAATTTTATTTCCTGACGCTGACTACAATAATGCACCAACGACTAAACATGCAATATCCGAAATGTTGGAAGCAATTACAGGAAATaagataatatcatcatcattgccAACAAAAATATGCGTTAAATGTATTGATAATGTGAAAATGTCATTTGCATTTCAGCACCAATGTATGAgatcatttgaaatattaacaaCAATGTTAAAAGACAAATTATTAACAGACCGATCAATCGAAATGGATATGAATGAtttgcataatataataaatacaccGGGCCTTTTGGAAGGTAACAATATCCAAAAGACTCAGCAATTGAATAGTAACTTTAGCGATAGACCTACTGAAgcaataaaatcaaatcacaAAGAAATACAAACCGATGAACGTTTATATTATGAGTGTGAGATGtgtgattataaatttttcgaTGAATTTTCATTGAGGCATCATCGAACCGAACATCctgatataaaatgtatgataTGTAAAAAAACGTTTACCAGGATAACCTTTTTGAAAAAGCATTTGTACGTTTATCATAAAAAGTCTTATAAAACTGGCGTTGAAAGAGAATGTAAagaatgtaaaaatatatttggtgCAAACCAATCATTTATACGTCACATAAAATTGTTTGAGAATTGTGGTAacaatttggaaaatattaaaacagcTAAACGAATTACCGATGCCAAAATAAcgcaacaaaataaaattcgtGTAAATGAAGACAAATTTCACATAGTAGTAGTACAGCAGAATGCCCAGGGCAAATGGGAGTGTAAAACTTGTGGAAAACTATACAATAATGAAAGTAATTTACGTAAACATATTTGTCGTAAATCGGAAATAGATACCGGAACTTCAACATCTGCAGGTACTGCGGTTCTAAGCAACGATAAACCATCCGTCTtATTACAGAATACATCCAATATGGcaataaaatcatcatcaactAGAGTTACAAGATCAGCAACTAGGAATTCCATAACTCCAATAAGTGATGCGATGAATTCTGcaataaaagaagaaatattgTCCGATAATGATGTAGACATAGAGGATGTAACTccatttgaaataatatttacaaatgaaCTTAGTTCCATtggtaatattaaaattaaaaataaaaataccgaTGATGACGccgcatataataaaaacgatttgaatttgaataatgTTGGTGTAATTTCTGCTGATGATTCGATTGATAATTATGATGAAGACTATAACCctttaataaaaacacaacagatcaataaaatcaataattattcAAACTCTAGCAATGATTTTAATGTAGAAGACGgtgatgaggatgatgatgtTGACGATAATGTTGTCGAAGATGATGAAGACGAcgatgattatgatgatgatgatgctgaaAATGTCGGCGAtaggatattaaaaaaaaaaatagttaaaaatacGAAACACAAAGACGAATTATTAGCTGAAAAACAACGTTCAAATTTGGGGGAACCCGTTCTGccatcaacaacatcaaatgACGATTTCAACGACGAACGAAACAGTGAAACATTGAAAATGGGTATCGAATCGAAAacaattagaaaaaaattatcaactaaaattaaaatagcATGCGATTTATGCGCACACACGTTTGTTGATTTTGCGGCATTTACAAGACATAAGGAACGGCATGCAAATATAAAAGCAAACAGGAAATcgaaaaattttcaatgttCAGTTTGTAACGcagcatttaaaaaaaaatctgtgtTAAATAGACATATGTATTCTCACAGCACAGAAAGACCGTTCATATGTACAATTTGTAAAACATCATTTACCTCTCCATATGGTTTAAAAAAGCACACAAAAACACATGACGAGAAGCGGCTAACGTGTTCTAtctgtaatataaaatttgataatgCAATCCAGTTAACGCATCATAAGAAGAGGGAACATAAGGTTGGGTTTGTTAAACAAAACTCCTACGTTTGTGATATTTGTTCGACATGGTTTGTTTCATTTTCGAATATAGAACGTCATATGAAACGACATACGGAACTGCAACAATGGGAATGTAAACATTGTAAACTACAATTTAATtcgtataaagaaaaaaagaaacattcAAGTTCACATAACTTTCATTTGTGTCCAGAATGTGcATTTCCACGTCTCATTGATCTCACAGCACATGAACGGCATCATACCAATTTTAGACCACATAAATGTACGATTTGTGATAAAGCTTTTACTCGGCCCTGCGGTTTAAAAACACACATGCGAACTCATACCGGTGAACGTCCATATAAATGCCAATTTTGTCCAAGTGCTTATGCACAATcatatgatttaaaaacacatattCGTCGACATACCGGCGAACGATTTAGATGTAATATTTGTGATGCTGCATTTATTCAGAATCATCTTCTGTCACAACATAAACGTAAAAACCATGGCATGTCAATTCCTACATTACATGGACGGTTAGAAAAAATTTTGCCGCCtaatgataatgatttatttCTCATAAAGTAA
- Protein Sequence
- MNDLWQRVKAITSDTCKHLMESVPRRNQAVIKSKVEMLSIYDFIDGILFPDADYNNAPTTKHAISEMLEAITGNKIISSSLPTKICVKCIDNVKMSFAFQHQCMRSFEILTTMLKDKLLTDRSIEMDMNDLHNIINTPGLLEGNNIQKTQQLNSNFSDRPTEAIKSNHKEIQTDERLYYECEMCDYKFFDEFSLRHHRTEHPDIKCMICKKTFTRITFLKKHLYVYHKKSYKTGVERECKECKNIFGANQSFIRHIKLFENCGNNLENIKTAKRITDAKITQQNKIRVNEDKFHIVVVQQNAQGKWECKTCGKLYNNESNLRKHICRKSEIDTGTSTSAGTAVLSNDKPSVLLQNTSNMAIKSSSTRVTRSATRNSITPISDAMNSAIKEEILSDNDVDIEDVTPFEIIFTNELSSIGNIKIKNKNTDDDAAYNKNDLNLNNVGVISADDSIDNYDEDYNPLIKTQQINKINNYSNSSNDFNVEDGDEDDDVDDNVVEDDEDDDDYDDDDAENVGDRILKKKIVKNTKHKDELLAEKQRSNLGEPVLPSTTSNDDFNDERNSETLKMGIESKTIRKKLSTKIKIACDLCAHTFVDFAAFTRHKERHANIKANRKSKNFQCSVCNAAFKKKSVLNRHMYSHSTERPFICTICKTSFTSPYGLKKHTKTHDEKRLTCSICNIKFDNAIQLTHHKKREHKVGFVKQNSYVCDICSTWFVSFSNIERHMKRHTELQQWECKHCKLQFNSYKEKKKHSSSHNFHLCPECAFPRLIDLTAHERHHTNFRPHKCTICDKAFTRPCGLKTHMRTHTGERPYKCQFCPSAYAQSYDLKTHIRRHTGERFRCNICDAAFIQNHLLSQHKRKNHGMSIPTLHGRLEKILPPNDNDLFLIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -