Dfeb001052.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284468.1:2324859-2327375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.057 3.3 8.8 2.5 1 23 169 191 169 191 0.97 2 10 0.087 5 8.2 0.3 2 21 196 215 195 216 0.93 3 10 8.8e-05 0.0051 17.6 0.7 1 23 220 242 220 242 0.98 4 10 2.9e-06 0.00016 22.3 2.0 1 23 282 304 282 304 0.98 5 10 3.9e-05 0.0022 18.7 1.1 2 23 311 332 310 332 0.97 6 10 4.4e-07 2.5e-05 24.8 1.5 1 23 338 360 338 360 0.98 7 10 0.00062 0.035 14.9 1.5 1 23 366 388 366 388 0.98 8 10 5e-05 0.0029 18.4 1.0 1 23 391 413 391 413 0.98 9 10 4.7e-07 2.7e-05 24.7 1.2 2 23 420 441 419 441 0.97 10 10 0.00099 0.057 14.3 0.2 1 23 447 469 447 469 0.98
Sequence Information
- Coding Sequence
- atggACGATGATATTGAATTTATCGCATCACCAATTCAAGTATTAATAAAAGATGAAATTCATGAATCGTTTCCCTATCAAATAATTGAAGATGAAGATAATTCAAAAAGTGTTTTTTCTACTGACTGGGGTGGTAACGGCGAAGATCAGGAATCAACAACGAATGTTAATATTAGTGGCAACagcaaaaattataaaaatggaaTAACTACATTTAATCCAGAAGAAAAATTAACCGATTTTTCATTATCCTCATCATCCACGATAATACAAAACGAAATCGGttatgatgatgttgatgttgatgtgaataataaaaatgatgaatgcAACAGTAAagatttatatgaattaaaaacaattaatgaaaatgatttaaatgttACATTAAATCAACATATCAATcaacaaattgaaaatgttgATGCTGCGGATAAGATTATTGTTGATGAATtatctattaataataatgaactAAACGATATGAAATTGATGACAAATAAATTCCATTGCCATGAATGTTTAgtgaattttccaaatgaaAAACTTTATCAAATCCATCAGAATGGTCATCgtaacaatttaaaatgtgaATTATGTACGGttgtattgaaaaattttaaaaactatGAAAAACACATTGAAAAATGTAAACCATTTGAATGTAAATTATGTGGTAAAATAATTCGTTTTCGTccgaattttataaaacatcaACGTGTACATCAACGAAGACATCCAACTGCAGGGACAACAACTATgacgaataataataatatgaataatactGTGATCATCCATGAGATCATTCCAAGGAAAAAACCAAAATCTGAACGTTTTCattataaatgtgaaaaatgtgATAAAGAATTTACAAGTTGGGAATATTTTAAAGTCcataaaaaaatccataaagaaaatttaaatttaaaatgtaatatttgtGGGAAAACATTTAGTGCATTGGCATGTTTGAAGGGTCATCAAAAGGTGCATACCGGTGAAAGACCATTTCgatgcAAAGAATGTGGTAAATCATTTGGACAAtcgtataatttaaaaatccaTTCGCGATTACATTCGGGTGAAAAACCATTTGAATGTCATGTATGTGGACGTAAAATGAATACAACGGCCAGTTATAATGCTCACATAAAAACGCATAAAGATTTTAAATGTGAAATTTGTAATGAAacatttaatcaaaaaattaaatatatgtcaCATATGGGAATGCATGAAACGGGACGTACATTAGAATGTAAAATATGTGGTAAAAAATTTGGACGTTCATCGAATTTCTACAATCATCAACGTATTCATTTgggtataaaaaaatttaaatgttatatatgtgGTGGGGGATTCGTAAAGGCTACCCATTTGGATGCTCATCTATTGATACACTGTGAACAAGAAGAAGCGACGACTGCGAATGTTATGACggcgacgacgacgacgacgacgacgactaCGGTGACTACGCAAATAAATGATGATCAATCGGTAGGAGTGGCAGAAGaggatgttgatgatgatatgGATGATTCGATTGACttgaatttatcaaaaacaaataatgatAAACAATCATTATTGTTGTCGTCGACGGCAGAAAGGACAGATGAGTTAGAGTTAGTTAGTGCAGATAATAATACTAGTAGTACAGATACAATACTGCAATTACAAGGGACttctaataataatcataatattgatcatcaaatagaaaatattgaaaataatgaaaaacaaaatgatttttataattcaatactATTTTGA
- Protein Sequence
- MDDDIEFIASPIQVLIKDEIHESFPYQIIEDEDNSKSVFSTDWGGNGEDQESTTNVNISGNSKNYKNGITTFNPEEKLTDFSLSSSSTIIQNEIGYDDVDVDVNNKNDECNSKDLYELKTINENDLNVTLNQHINQQIENVDAADKIIVDELSINNNELNDMKLMTNKFHCHECLVNFPNEKLYQIHQNGHRNNLKCELCTVVLKNFKNYEKHIEKCKPFECKLCGKIIRFRPNFIKHQRVHQRRHPTAGTTTMTNNNNMNNTVIIHEIIPRKKPKSERFHYKCEKCDKEFTSWEYFKVHKKIHKENLNLKCNICGKTFSALACLKGHQKVHTGERPFRCKECGKSFGQSYNLKIHSRLHSGEKPFECHVCGRKMNTTASYNAHIKTHKDFKCEICNETFNQKIKYMSHMGMHETGRTLECKICGKKFGRSSNFYNHQRIHLGIKKFKCYICGGGFVKATHLDAHLLIHCEQEEATTANVMTATTTTTTTTTVTTQINDDQSVGVAEEDVDDDMDDSIDLNLSKTNNDKQSLLLSSTAERTDELELVSADNNTSSTDTILQLQGTSNNNHNIDHQIENIENNEKQNDFYNSILF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -