Dfeb009464.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:341129-343559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00011 0.0063 17.3 1.4 1 23 53 75 53 75 0.95 2 14 1.4e-05 0.00082 20.1 2.0 2 23 79 101 78 101 0.96 3 14 0.0015 0.085 13.7 0.5 2 21 114 133 113 134 0.93 4 14 2.1 1.2e+02 3.8 1.8 2 21 183 202 182 203 0.92 5 14 0.00014 0.0082 16.9 4.0 1 23 316 339 316 339 0.95 6 14 5.1e-05 0.0029 18.4 1.0 1 23 345 367 345 367 0.98 7 14 0.3 17 6.5 3.9 2 23 373 395 372 395 0.95 8 14 1.3e-06 7.3e-05 23.4 2.2 2 23 410 431 409 431 0.97 9 14 0.0021 0.12 13.3 2.5 1 23 437 459 437 459 0.98 10 14 1.1e-05 0.00062 20.5 0.7 1 23 466 488 466 488 0.96 11 14 0.0013 0.077 13.9 9.3 1 23 494 516 494 516 0.96 12 14 1.4e-06 8.3e-05 23.2 2.0 1 23 522 544 522 544 0.98 13 14 1.2e-07 7e-06 26.6 2.2 1 23 550 572 550 572 0.99 14 14 0.0058 0.33 11.9 0.9 1 23 577 600 577 600 0.97
Sequence Information
- Coding Sequence
- ATGCCTGATTCTATTTATGATAACGATAATGATGATAGTGATGTTGGAATTGAGGATTGGCCCCCCTTTGAAAATGAGATTCGATTAACCCGTCAAGATCAACTACATGAAACTGGACCAAATGATAAACAAACTCAAACGGAAGAATTTCTATTTCATCCATGTGAAGTgtgtaatgaaaaatttatcgATCAACGTTCATTGAAGaAACATCGTTCTGGTCATATTGACAAAAAATGTCGTATATgtaataaagaatttataacattttcatcATTACGCCGGCATTTAAGAAATGTGCATTCAATGAATGCCCTATCGGAAAAATTTGATGAGATCAAGTGCAAAGAATGTAATAAACTTTTTAGAAACAACACCATGTTTATACAACACCTTGaatcatatacaaattgtgGCTCGAATTtggaaaatattgaaaatgcaAAACGTATTACCGATGCTAAAATAAAGCGAAAAcaacaaattgaaattaacGCCAGTAAATGTGGATTAATAACCGTACATATGAATGTCAATGGTCAATGGGAATGTAGCAATTGCAAAAACTTATATGACAACGAAAATGAATTACGTAAACATCAttgcatattaaatataaaattaacagGAACCACACCAACCAAAACCGAAACTGGTgatgttaataatattgtGAAAACGGAGAATAACATCGAACCATTAGCATTGATGAacattatctataaaaatccCGTTGTAAAACAAGAACATAACAATGATTGTAATCCAAATTTTGAAATAGTATTTCCAGATACGGCATCATTAAATAATGTGGATGCCGAATTCAAAAATGACTTAGATGACTTAGATTGCAAAAGcgattatgataataattatcataatgaTAAATctgattcgtttgcacgacataaaaaatcacatacaacgtcaaaacaaaaaattagaCATATCTGTGAAGTATGTAATAAAGAATATTCAAGAAAACATGCTCTTACGAGACATCGTACTATGCAACATAGTGATGCCACACCATATGAATGTAACATTTGTAAAAAAgcatttaaaattcaatattatttaaccTTACATAAATTGGTGCATTCCGAAGATCGACTGCATTGtaatatttgtgatataaaatttaaatgtgcATTAGATTTAACAGTGCATCGAAAAAAGCAACATATGGAGGAATATCGTAGACCACcgataaaagaaaaacccgTCGTTTGTGATATTTGTTCCAAAAGCTTTACCCGAAAACGAACTTTAAaatatcacatgaaaagacatacagtaaaacatttttataaatgtcaATATTGCAcggaaaaatttaatacaaaacaGGAACAAATGGACCATTTGAAAGAGCATCCAAATGAATTGCGACCATTTTTATGTACTGAATGCGGTTTAAGTTTTTCAAAGAATACGGGATTTATAGTGCATATGCGACGTCATAGGGGTGAAAAACCATTTCGGTGTACATTTTGCGATAAATGTTTTTCACGTCATTCGGATTTACTCCAACACGAACATTATCATACCGACAACAAACCATTTATTTGCACGATATGCGGCAAAGCGTTTCATCGTCGTACCGCCTTAAAAGTACATACACGTACACATACCGGTGAACGTCCCTATAAATGCACCTATTGCACCAAAGCATTTACCCAAAGCAATGATTTAAAAGTCCACATTCGTCGGCACACCGGTGAAGTatttaaatgtgaattttGTGCCGCCAGTTATATTCAACAATACCTTTTGTCAAAACACAAACTGAAGGTGCATGGTATAAAAGTTGAATCGATTTCAGGACGATTGCAAAAATTTCAACCTATAAACCAGGAAGCCTCTGTGAATGCAATACCCGTAGTAATAAAACAGTAA
- Protein Sequence
- MPDSIYDNDNDDSDVGIEDWPPFENEIRLTRQDQLHETGPNDKQTQTEEFLFHPCEVCNEKFIDQRSLKKHRSGHIDKKCRICNKEFITFSSLRRHLRNVHSMNALSEKFDEIKCKECNKLFRNNTMFIQHLESYTNCGSNLENIENAKRITDAKIKRKQQIEINASKCGLITVHMNVNGQWECSNCKNLYDNENELRKHHCILNIKLTGTTPTKTETGDVNNIVKTENNIEPLALMNIIYKNPVVKQEHNNDCNPNFEIVFPDTASLNNVDAEFKNDLDDLDCKSDYDNNYHNDKSDSFARHKKSHTTSKQKIRHICEVCNKEYSRKHALTRHRTMQHSDATPYECNICKKAFKIQYYLTLHKLVHSEDRLHCNICDIKFKCALDLTVHRKKQHMEEYRRPPIKEKPVVCDICSKSFTRKRTLKYHMKRHTVKHFYKCQYCTEKFNTKQEQMDHLKEHPNELRPFLCTECGLSFSKNTGFIVHMRRHRGEKPFRCTFCDKCFSRHSDLLQHEHYHTDNKPFICTICGKAFHRRTALKVHTRTHTGERPYKCTYCTKAFTQSNDLKVHIRRHTGEVFKCEFCAASYIQQYLLSKHKLKVHGIKVESISGRLQKFQPINQEASVNAIPVVIKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -