Dfeb010135.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:10778027-10780955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0051 0.29 12.0 5.1 1 23 145 167 145 167 0.98 2 13 0.00013 0.0077 17.0 1.6 2 23 171 192 170 192 0.97 3 13 0.013 0.72 10.8 0.9 3 23 424 444 422 444 0.94 4 13 9.2e-06 0.00052 20.7 0.9 2 23 457 478 457 478 0.97 5 13 1.2e-05 0.00066 20.4 3.3 1 23 484 506 484 506 0.98 6 13 0.0042 0.24 12.3 1.3 2 23 512 534 511 534 0.97 7 13 0.00035 0.02 15.7 1.5 1 23 544 566 544 566 0.98 8 13 0.011 0.62 11.0 6.2 1 23 572 594 572 594 0.98 9 13 3.9e-05 0.0022 18.7 0.3 3 23 603 623 602 623 0.99 10 13 1.9e-05 0.0011 19.7 1.6 1 23 629 651 629 651 0.98 11 13 3.8e-08 2.1e-06 28.2 3.0 1 23 657 679 657 679 0.98 12 13 1.7e-05 0.00095 19.9 0.8 1 23 685 707 685 707 0.99 13 13 8.5e-05 0.0049 17.6 1.3 1 23 712 735 712 735 0.97
Sequence Information
- Coding Sequence
- ATGCTTTCAATATATGCTTTTATTGATGGGATTCTGCCCACTGACGCTGACTTCAATAATGTTTCATTCGCACCAACAACTAAACATGCAATATCCGAAATGTTGGAAGCAATTACAGGAAATaagataacatcatcatcagaATTACCAACAAAAATATGCGTGAAATGTACTGATAATGTGAAAATGTCATTTGCATTTCAGCACCAATGTAAGAGatcatttgaattattaacAACAATGTTGAAAGACAAATTATTAACAGACCAATCAAAAGAAATTGATATTAGTGATttgcataatataaatactcCGGACCTTTTGGAAGATAATATCCAAAAGAATCAGCAATTGAATAGTGACTTCAGCGATAGACCTGCTGAAGCAACGGAAAGAAATCATAAAGAAATACAAACCGATGAACGTTTATATTATGAGTGTGAGATGTGTGATTGTACATTTTTCGATGAATTTTCACTGAAGCATCATCGAACCGTACATCctgatataaaatgtatgatgtgtaataaaatgtttataagtataaaatcTTTGAAAAGTCATTTACGCAAACATATTTGTTGTAAATCGGAAAAAATTGAAACTGAAACTTCAACACCTGCAAATATGACGGTTTCAAGCAATGACGAAGGATCCGTAATATTACAGAATACATCCAATATGGCAATAAAACCATCAACTAGAGTTACAAGATCAGCAACTAGCAATTACATAAGTCCAATAAGTGATGCGACGAATTCTGcaataaaagaagaaatattgTCCGATAATGATCCAGACATAGAGGATGTAACTccatttgaaataatatttacaaatgaaCTTAATTccatttgtaatattaaaattgaaaataaaactacCGATGAcgcaaataataaaaacgattTGAATTCGAATAATGATGGTTTAGTTTCTGCTGATGATTCGATTGATAattatgatgaaaattataaCCCTTCGATACACACACAACAGATCAATAATTCAAACTCGAGCAATGATTTTAATGTAGAAGATAGTTATAACAGTGATGATGAcgatatgatatttataaaaaaaaaaaaagttaaaaatacGAAACATAAAGACGAATTATTGGTTGATAAACAACGTTCAAATTTGTGGGAACCCGTTCTTCaatcaacaacatcaaatCACGATTTCAACGAACGAGCGATTACAGTCAATAAGATTATCCAATCTGAATCAATTAACAAAAACTTGTcaactaaaattaaaatagcATGCGATTTATGCAAACATACTTTTGTGGATTTTGATGCATTTACAAGACATAAGGAATGGCATGCACATTTAAAAGCAAGCTCGAAATTCAAAATTCCTCAGTGTTCAATTTGTAATGTAGTATTTACAAGAAAATCTGTGTTAACTAGACATATGTATTCCCACAGTAATGAAACACCGTTTGTATGtacaatttgtaaaaaatcatttaaatctCCCTGTAGTTTAAGAGAGCACACAAAAATCCATGACGAGAAGAGGCAAACTTGTACTAtctgtaatataaaatttgatagtTTATTGCAATTAACACTTCATAAGAGGAGGCAACATAACACTGAATTGGTTAACCACAGTTCCTACTTTTGTGATATTTGTTCGGCGTTGTTTGTTTCGTTTTCGAATATGAAACGCCATATGAAACGACATACGGAACAGCGACAATATGAATGTAAGCATTGTAAGGAAACATTTAATTCGTATAAAGAAAAAgagaaacataaaaaatctcattggaaaaataacaaaatacaattgtGTCCGGAATGTGGTAAGAGTTTAAGAAGTGGTTCGGCTTATACCACTCATATGCGTCGTCATAACGGCATAAACCCATTTCGTTGCAAATTTTGTGAAAAAGCATTTCCACGCAATGCTGATCTGAATGCACATGAACGACACCATACGGATTTTAGACCACATAAATGTACGATTTGTGATAAAGCTTTTACTCGGCCTCATGCTTTAACAGTACATATGCGAACTCATACCGGTGAACGTCCATATAAATGCACATATTGTCCAAGTGCTTATGCACAATCGCAGgatttaaaaacacatattCGTCGACATACCGGCGAAcgatttaaatgtaatatttgtGATGCTGCATTTATTCAGAATCATCTTCTGTCACAACACAAACGAAATGAGCATGGCATGTCCGTTCCTTTATTAAACGGACGGTTAAAAAAAGTTTTGCCGCCTAATGATAAAGAAAGAAGCATTACCACGGCTGAGGGACCATCAGCGTTAATACAATTAACACCCTAA
- Protein Sequence
- MLSIYAFIDGILPTDADFNNVSFAPTTKHAISEMLEAITGNKITSSSELPTKICVKCTDNVKMSFAFQHQCKRSFELLTTMLKDKLLTDQSKEIDISDLHNINTPDLLEDNIQKNQQLNSDFSDRPAEATERNHKEIQTDERLYYECEMCDCTFFDEFSLKHHRTVHPDIKCMMCNKMFISIKSLKSHLRKHICCKSEKIETETSTPANMTVSSNDEGSVILQNTSNMAIKPSTRVTRSATSNYISPISDATNSAIKEEILSDNDPDIEDVTPFEIIFTNELNSICNIKIENKTTDDANNKNDLNSNNDGLVSADDSIDNYDENYNPSIHTQQINNSNSSNDFNVEDSYNSDDDDMIFIKKKKVKNTKHKDELLVDKQRSNLWEPVLQSTTSNHDFNERAITVNKIIQSESINKNLSTKIKIACDLCKHTFVDFDAFTRHKEWHAHLKASSKFKIPQCSICNVVFTRKSVLTRHMYSHSNETPFVCTICKKSFKSPCSLREHTKIHDEKRQTCTICNIKFDSLLQLTLHKRRQHNTELVNHSSYFCDICSALFVSFSNMKRHMKRHTEQRQYECKHCKETFNSYKEKEKHKKSHWKNNKIQLCPECGKSLRSGSAYTTHMRRHNGINPFRCKFCEKAFPRNADLNAHERHHTDFRPHKCTICDKAFTRPHALTVHMRTHTGERPYKCTYCPSAYAQSQDLKTHIRRHTGERFKCNICDAAFIQNHLLSQHKRNEHGMSVPLLNGRLKKVLPPNDKERSITTAEGPSALIQLTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -