Dfeb002516.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284468.1:18136344-18142679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.44 25 6.0 1.1 2 23 178 200 177 200 0.95 2 19 0.041 2.3 9.2 0.3 1 23 232 255 232 255 0.95 3 19 0.0005 0.029 15.2 3.2 1 23 263 286 263 286 0.96 4 19 0.0016 0.089 13.7 2.1 1 23 294 317 294 317 0.96 5 19 0.0023 0.13 13.1 2.3 1 23 323 345 323 345 0.96 6 19 0.054 3.1 8.8 0.8 2 23 354 375 353 375 0.97 7 19 3.5e-05 0.002 18.8 0.2 3 23 382 403 380 403 0.95 8 19 8.7e-05 0.005 17.6 1.6 1 23 409 431 409 431 0.97 9 19 0.00026 0.015 16.1 4.4 1 23 437 460 437 460 0.98 10 19 0.08 4.6 8.3 0.5 2 23 667 689 666 689 0.95 11 19 5.9 3.4e+02 2.4 0.2 6 23 698 715 698 715 0.96 12 19 1.3e-05 0.00073 20.2 1.2 1 23 721 743 721 743 0.99 13 19 0.27 15 6.6 2.3 1 19 753 771 753 776 0.94 14 19 3.7e-06 0.00021 21.9 0.1 1 23 781 804 781 804 0.96 15 19 0.00067 0.038 14.8 0.3 3 23 812 833 810 833 0.95 16 19 1.4 81 4.4 2.0 2 23 843 864 842 864 0.95 17 19 2.8e-05 0.0016 19.2 0.6 2 23 870 892 869 892 0.97 18 19 3.1e-05 0.0018 19.0 0.5 1 23 897 919 897 919 0.97 19 19 0.00018 0.01 16.6 5.1 1 23 925 948 925 948 0.98
Sequence Information
- Coding Sequence
- atgAATTGTTTAGCAAATCGCAATAACTTTGATATCGTTGGTGGTGACGATAGTAAAAATTGGTTAGCAACGGAATCGCCAGAcgacaataatttaaaaaatgatttcgAAATTGATGGTTTGTCAATGTCAAATGTAAATAGCGTTGCATTTGTTAAGGTCGAAGAAGATGAAATATGTTATGATGATAATGCATCGAATCAATTAATAACAACATCAATGGATTTAAATTATCATGATATGGTGATTAAAGAAGATATTCTCATTTTAGAagATGATGAACATCCACTTCAATGTAaatcaaatagaaaatttaaaaaattaccgAATCGAATCAAACAATCattggaaaatgaaaattttgatatGGATACCGAAAAAGTGATATGTACAACTATGAACGATGGTTTGGAAGTGGCGGTAAACGAAACACGACCATCAACAATCGACAACAATTCAGATGATACAAAACAAATACGTAAACAACAACGTGAACTTGAAGATAAACAAATgtgtgaatattttaatatggtTTGTGAACTATgtgaatgtaaatttattacatttattgaaGCGAAAAAGCATTATCGTGAAGAGCATAATTCCAAGGGATATCTTTCATGTTGTCaacgaaaattttttttccgtAATGCAATTCTGGAACATATTCAATGTCATTTGGATCCAGAgacatataaatgtattcattGTGATAAATTGCTACCAAATCCACGGGCATTACGGGCACATATTGACAGCCGACATATTCCATCTGATGAAAAGCCCTTTAAATGCGACCAATGTCcaaaaacattttccaaagtatttcaattaaaatatcatgTAAAATATCGTCATTATGTTgaagaagataaaaaatttCGTTGTGAGGAATGTGATAAAtgttttatgtcGAAATTCATTTTACAACAACACGTTAGAGGTATCCATGAATTAAGTAATTTACATATCTGTGATATTTGTGCAAAAgtatttaaaagtaaatattttatggaattACATTATAAATCACATTTTGCCAATTTACAACAGAAAATTCAATGTACATTATGTAATAAATGGCTTATGAATAAACGTGGTCTACAAAAGCATTTGCGTTTACATAACGATACGGTCCAAATATGTCCAGAATGTGGTCGTAAAACACCAAATAAAAGTGCATTAAGAAatcatattaattatatgcATTCATCAGAACGTACTCATGTATGTCATCTATGTGATAAAGCATTTAAAAAATCGATTGGTTTAAAAGAACATATTGCATCTCATACCGGTGAATCTTTGTACACATGTCCTCATTGTccacaaaaatttaattcaaatgcTAATATGCATTCACATCGTAAAAAAGTGCATCCAATTGAATGGAAAGAAGATCGCTTAAAACGTGcatataaaaattatattaccaTAAATCCTGTGTTAATAAATGTCGATAACAGTGATGGTTATATCAAAAActttacattaaatattgaaCCAATAAATAATACGACCACTACCGTTACCAATACTCCTACTGATTTACAAAATACCGATACCAGTAATAAAGATGCGATTACAATAGAAGGCATAAAATgtgatatacaaaattttgattCAAACATAGAAGCACCAAACattcaaagtatatatttCCAAAATAATCATTGGGATGATAAGGTCCAAATTGACGATTCCACGGTTAAAATTACCGATAAGAACAGTGaagataatgatgatgatgatgaagatgatgaagaagaaTTTAGATTAAAACCGCAGAAATCACCCAAATCTAAAGTAGAATGGGAAATAAAGAAAATGGTTAAATCAGCGAACGCGGTTGAAACAAGGCAATCAAAACGTAAGTATAAAAGTCGACCTGATGTAAATACCGAATTacccaaaacaaaaaaaacaaaacacagtTTATtggaaaaagaacaacaacgTGAAATGGAAGATGTTCAAATTCGTGAATACTTTAAAATGGAATGTGAATTATGTCCATTTAAATTTGAAACGTATAATGATGCAAAAACACATTATCGTCTGCAACATAACGTTAaaggatatattatatgttgtagtaaaaaatttatacGACGTGGCCGAGTATTAGAACATATTTTACAGCATACAAATccagaattttataaatgtgaaTTGTGTAATAAAACGTATGCGGAAAAATCAACATTAAAGTATCACATTGAAACGCATCGGATACCAAATGAAGCTGAACGACCATATAAATGTGATAAATGTACAGATCGTTTTTCAAAACCATTTCAATTGTCACAACATGATAAATTACGACACGATACAAAACAATATGCATGTGAGGAATGCGGTAAAATtTTCCAATCGAAAACTAACTTATCAGCTCATATACGTGGTATACATAATCAGGTGTTTACACAAATATGTGATATTTGTGCAAAAGTATTTAAAAGTGCACAAACATTAGAATATCATCGTCGTCAATTGCATTTCTCCGACAATCAAGAACCAAAAGTTCAATGTAATATTTGTGGATCAtgGTTAAAACATGCACTTAGtttacataaacatttaatgCGTCATAATGATGTTGCACAAAAATGTCCACATTGTGATAAGCAAGCACCAAATAGTGATGCATTAAAAAGTCATATAAGAACGGTACATACAGAACGTTTGCACGTTtgtaaattatgtaataaagCATTTAAAAAACCGGTTGCATTAAAGgaaCATATTGCATCTCATACCGGTGAATCTTTGTATACATGCCCTCATTGTTCGAGAACATTTAATTCAAGTGCGAATATGCATTCACATCGTAAAAAAGCTCATCCTGTGGAATGGCTTGAGAATCGTGGAAAACGAATATTatcatacaaataa
- Protein Sequence
- MNCLANRNNFDIVGGDDSKNWLATESPDDNNLKNDFEIDGLSMSNVNSVAFVKVEEDEICYDDNASNQLITTSMDLNYHDMVIKEDILILEDDEHPLQCKSNRKFKKLPNRIKQSLENENFDMDTEKVICTTMNDGLEVAVNETRPSTIDNNSDDTKQIRKQQRELEDKQMCEYFNMVCELCECKFITFIEAKKHYREEHNSKGYLSCCQRKFFFRNAILEHIQCHLDPETYKCIHCDKLLPNPRALRAHIDSRHIPSDEKPFKCDQCPKTFSKVFQLKYHVKYRHYVEEDKKFRCEECDKCFMSKFILQQHVRGIHELSNLHICDICAKVFKSKYFMELHYKSHFANLQQKIQCTLCNKWLMNKRGLQKHLRLHNDTVQICPECGRKTPNKSALRNHINYMHSSERTHVCHLCDKAFKKSIGLKEHIASHTGESLYTCPHCPQKFNSNANMHSHRKKVHPIEWKEDRLKRAYKNYITINPVLINVDNSDGYIKNFTLNIEPINNTTTTVTNTPTDLQNTDTSNKDAITIEGIKCDIQNFDSNIEAPNIQSIYFQNNHWDDKVQIDDSTVKITDKNSEDNDDDDEDDEEEFRLKPQKSPKSKVEWEIKKMVKSANAVETRQSKRKYKSRPDVNTELPKTKKTKHSLLEKEQQREMEDVQIREYFKMECELCPFKFETYNDAKTHYRLQHNVKGYIICCSKKFIRRGRVLEHILQHTNPEFYKCELCNKTYAEKSTLKYHIETHRIPNEAERPYKCDKCTDRFSKPFQLSQHDKLRHDTKQYACEECGKIFQSKTNLSAHIRGIHNQVFTQICDICAKVFKSAQTLEYHRRQLHFSDNQEPKVQCNICGSWLKHALSLHKHLMRHNDVAQKCPHCDKQAPNSDALKSHIRTVHTERLHVCKLCNKAFKKPVALKEHIASHTGESLYTCPHCSRTFNSSANMHSHRKKAHPVEWLENRGKRILSYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -