Dfeb012543.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:46950639-46953534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.12 13.3 0.2 2 23 343 365 342 365 0.91 2 12 0.00028 0.016 16.0 1.3 2 23 401 423 400 423 0.96 3 12 0.00035 0.02 15.7 0.5 2 22 491 511 490 511 0.94 4 12 1.8e-06 0.0001 22.9 2.6 1 23 519 541 519 541 0.98 5 12 0.029 1.7 9.7 3.5 2 23 567 588 566 588 0.97 6 12 1.9e-06 0.00011 22.8 1.7 1 23 594 616 594 616 0.99 7 12 4e-07 2.3e-05 25.0 0.8 1 23 622 644 622 644 0.96 8 12 2.2e-06 0.00012 22.7 0.6 1 23 650 672 650 672 0.99 9 12 1.2e-05 0.00067 20.4 0.5 1 23 678 700 678 700 0.98 10 12 5.2e-05 0.003 18.3 0.5 1 23 706 728 706 728 0.98 11 12 0.0034 0.19 12.6 5.8 1 23 734 756 734 756 0.98 12 12 0.00019 0.011 16.6 6.0 1 23 762 784 762 785 0.96
Sequence Information
- Coding Sequence
- ATGAAATTAGATTTGGAAAAAGTTTGTCGAACTTGTACAATggaaacattaaatttaattccaatatttaataataataataataataataataataataaaagtaaattatcaataaataaactGGATGAgaaactaaaacaaaaaccaaGAATCAAACAAGAAAATTCAAGCATTATAACAATGTTGGAATCATTTACAACAATTCAgGCTCATCAAGATGATAATTTACCAAAACACATATGTTTACAATGTTTTAGTGAAATAAATCGATCATAttcatttaaacaaaaatgtgaACGTTCCGAagaaacatttaaattatattttcaacaaGCAATTGCCATTGATGTTGATGAACATAATGAAAACTGTAACAAGAacaaaaatgatgatgatgatgatgatagtaAAATGGAATATTCAATTTCTAATTCATTAATACCTTCAATAAGTGATAAGGAAAATGCACCACAATCACCGTCGCCTACGCCGCTGCCCAATCCAACGACCACGACACAGTCTGAATGTGTATGGGTAAGTTATCAACAtttattacaacaacaacaagcaGATAACAGCAATAGAAACAAACCAATGCTATCGGAAATTATCGAATTAATTAAAGATGAAGATTTATCAAATAATGAGATCAGTAGTGgagattatataaatgttgatCTCATCAATGGAACGTCCAATCAATATCAAGTggtaaataataatgatgatgatgatgaaaattatgTTGAAATTGAAGTAGAAGACGAagaagaacaacaacaacaacaaaaacaaaaggtatcaaatttaaatgatcTCTTAGACATATtgaatgatgaaaatgaaacaattaaaCAATCCATAATTGGTAAACGTAAACAAGTAGAAGAAAACATAGAACAATTGGAAGAattagaagaagaagaagtagAAGAATATAATCCAGGTCATCCAggttttgaaattataaatacagaTCAAATTGAATTGGATAATGCGAACGATtctgataaaattaatttaatttgtaatgaATGTAAATATAGTTTTCCAAATGAAGATGAATTATTTGAACATTTTGATAAAGTACATTCTGACCAAAAGAATCAAAACCATCATCATACGGATGCAAATGATCAACAAGAACAacaaatccgaataaaaaaatctttaacttcaaaattatcaaatcgcataaaatgtaaattttgtcCATTagaatttacatataataaaaatttattaaatcatttaaataaataccataaCGATGAAAACCcacttgaaaaaaaaacaataaacaatgtACGGTATGTAAAacaattgattaaaaaaaataatattaattcgTCGCGAACCAGCGAACCTATCGATGATCGATGTCcatttgtaattgaacgacTTGATCCGGTTGCCGATCGTATCCTATTAAATGACATTAAAATTGATGGTATGATTATcgaattaaaatgtaataaatgtggTGCAACATTTGTAAAAAAACGTTCATTATCAATACATCAAAAAATGAATCGATGTACAATGAAATCATTTACGTGCAATTATTGTAAACGTGTATttattagaagaaaaaatttacaagCCCATTTATTCACTCATACCgaacaacagcagcaacagcagcaacaacagcagcaacagcagcagcagcaacaacagtCATCAGCCCAATTAAAATGCCATCAATGTGATTGTGAATTTTTAACCATTGATGAATTTCAAGTGCACATGAATACCCATAATCcattgaaaaaatatcaatgtcaaTTTTGTCCAAAGAGTTTTTCAATGATGTCCACGTTAAAGGATCACATTCGTACGCACAACGGTGAACGTCCATATTTATGTTCAATATGTGGTAAAGGATTTAGTCAAAgtacaaatttaaaacaaCATTTAATGCGTCACTCGAATACCAAACCATATAAATGTAATCAATGTACATTGTCATTTGTTAGCAAAGGTGAATTAGAAGCGCATTTACGTAAGCATACCGGTGATCATCCATTTGTATGTGATACATGTGGTTCCGGTTTTACAACGTCCAGTTCATTGGTAAAACATAAACGTATACATACTGGTGAACGACCATATGCCTGTGAATATTGTCCGATGCGTTTTACCGCATTGGgtacattaaaaaatcatcGACGTACGCACACCGGTGAACGTCCATTTATCTGTGAATATTGTCATCGTTCATTTGCCCAAAAAAGTGATTGTGTTTCACATAAACGTACCCATACAGgTGAACGACCATATATTTGTATGCATTGTGGTATGGGCTTTCATCAATCAAGTACATTAAAATCACATATAAAAACACATCATAATGTTAAAGCAGTCAAGACAAATGAACGATTGGCGAGAAAAACGAGTGATTGTGATGATGAAGATGGTGATGATGAAATACTATTAGATGTACATATTTCTGAAgaataa
- Protein Sequence
- MKLDLEKVCRTCTMETLNLIPIFNNNNNNNNNNKSKLSINKLDEKLKQKPRIKQENSSIITMLESFTTIQAHQDDNLPKHICLQCFSEINRSYSFKQKCERSEETFKLYFQQAIAIDVDEHNENCNKNKNDDDDDDSKMEYSISNSLIPSISDKENAPQSPSPTPLPNPTTTTQSECVWVSYQHLLQQQQADNSNRNKPMLSEIIELIKDEDLSNNEISSGDYINVDLINGTSNQYQVVNNNDDDDENYVEIEVEDEEEQQQQQKQKVSNLNDLLDILNDENETIKQSIIGKRKQVEENIEQLEELEEEEVEEYNPGHPGFEIINTDQIELDNANDSDKINLICNECKYSFPNEDELFEHFDKVHSDQKNQNHHHTDANDQQEQQIRIKKSLTSKLSNRIKCKFCPLEFTYNKNLLNHLNKYHNDENPLEKKTINNVRYVKQLIKKNNINSSRTSEPIDDRCPFVIERLDPVADRILLNDIKIDGMIIELKCNKCGATFVKKRSLSIHQKMNRCTMKSFTCNYCKRVFIRRKNLQAHLFTHTEQQQQQQQQQQQQQQQQQQSSAQLKCHQCDCEFLTIDEFQVHMNTHNPLKKYQCQFCPKSFSMMSTLKDHIRTHNGERPYLCSICGKGFSQSTNLKQHLMRHSNTKPYKCNQCTLSFVSKGELEAHLRKHTGDHPFVCDTCGSGFTTSSSLVKHKRIHTGERPYACEYCPMRFTALGTLKNHRRTHTGERPFICEYCHRSFAQKSDCVSHKRTHTGERPYICMHCGMGFHQSSTLKSHIKTHHNVKAVKTNERLARKTSDCDDEDGDDEILLDVHISEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -