Dfeb012320.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:42234926-42239969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00081 0.047 14.6 0.5 2 23 219 241 218 241 0.97 2 23 7.3 4.2e+02 2.1 5.6 3 23 249 269 247 270 0.89 3 23 0.26 15 6.7 0.7 1 23 325 348 325 348 0.86 4 23 5.8e-06 0.00033 21.3 1.0 3 23 358 378 356 378 0.97 5 23 0.00012 0.0071 17.1 0.8 1 21 386 406 386 407 0.94 6 23 0.0068 0.39 11.7 0.2 1 23 431 453 431 453 0.98 7 23 0.0024 0.14 13.1 5.0 1 23 459 482 459 482 0.97 8 23 6.7e-07 3.9e-05 24.3 1.7 1 23 488 510 488 510 0.98 9 23 9.4e-06 0.00054 20.7 3.6 1 23 516 539 516 539 0.98 10 23 5.2e-06 0.0003 21.5 0.2 1 23 545 567 545 567 0.99 11 23 0.00018 0.01 16.6 3.2 1 23 572 595 572 595 0.98 12 23 0.017 1 10.4 2.0 2 23 777 799 776 799 0.97 13 23 9.6 5.5e+02 1.7 4.1 5 23 809 827 805 828 0.89 14 23 6.5 3.7e+02 2.3 5.4 1 23 882 905 882 905 0.95 15 23 6.2e-05 0.0035 18.1 0.4 1 23 914 936 914 936 0.93 16 23 0.00029 0.017 16.0 0.5 1 23 941 963 941 963 0.97 17 23 2.6e-05 0.0015 19.3 1.3 1 23 971 993 971 994 0.96 18 23 0.0001 0.0059 17.4 0.9 1 23 1016 1038 1016 1038 0.98 19 23 0.0056 0.32 11.9 4.0 1 23 1044 1067 1044 1067 0.96 20 23 1.1e-05 0.00063 20.4 3.7 1 23 1073 1095 1073 1095 0.98 21 23 0.00027 0.015 16.1 6.7 1 23 1101 1124 1101 1124 0.94 22 23 3.3e-05 0.0019 18.9 0.4 1 23 1130 1152 1130 1152 0.99 23 23 0.002 0.12 13.3 0.9 1 23 1157 1180 1157 1180 0.97
Sequence Information
- Coding Sequence
- atggattGGAGGAATACGTCGTCGCCTTCGATTGATAAACcaccaccaacaacaacaacaagaacaaatgaaattgattcaataattcaaAAAAACCAACCAAATGAAAATAGTCATAAAgtttattatagtttaattGAAACATGCCGATTATGTTTAAGAAAtgatcaattattattattatgtccAATTTTTGATGCAACAAATCCCCAACAATCAGAAAAGATTTCAACAATCATTGATAATACATTAAAAGTTTCCATTCAACAAAATGATAAATTGCCACAGAACATTTGCAATGTATGTACggaatttttgtataaaattgatCAATTTCGTAATGATTGCTTGAAATCCCAATTAATTttacaacaatattttattattaataataataatgataatgataattgTCAACCATCAAATGATATTGAAGATGAAAATACTGAAGGGGATCATGGAAATAATCGAATTGATGATATCACTGACAATACACTGGAAAGACCATCAGTTATCGAACGGATAAATATCAAGAAAAGTGTAAATGCGGAACTGATTGATCGATCAGAAATAACAGAAATGTTACCTAAAAGTACAAATACAACGATATCGACTAAcgatattgatattgatattgataatcaaaatgaaaaaaaatgtgattattGTTCAATGGTTTATTCTAATATGAAAGAATTAAATgaacacataaaaataatgcatCCAAATGAAGAACTTCATTTATGCAttcattgtttaaaaacatttaatagCAATAAATCTATGGAAATGCATTTAGcccaacatcatcatcatcatcatcatcgtcgtcgtcgtcgtcatcatcatcagttagataaaaaaccaaaaatctcaccatcaaaaataaatacagataTAAAATCGAATAATTCTaagttaaatgaaaattatttattaaaacactATTTATCAACTCAAAACGATTGctattataaatgcaattattgtTATGAAAGATTTCCCAGTGATGTTAAGCGAATAGCTCATGAAAAACTATCGCATAGTGAACAAACAAGATTTAATTGTCTATGCAGTATTTGTGGAAAAGcatTCCGAAGTCGTAAATCATTAGCCGCTCATATGTCAGTGCATCGGGAGCTCAGTAGACAATTATTTTCATGCACAAATTGTgataaagCTTATACCAATACAAGATCACTAAAAAAGCACATTGAACGTTATTACGTAGAGGGACAACCATGTAAAATATTCGGGGTACAATCAAATAAGGAATTGAAACCACCATCATTTTCTTGTGAATTATGTAATGTTATGTTTCCTTTAAAGAGTGTGTTAAGTGATCATATGAAGGAGCATCGGCCcgaatataaatttcaatgtaaaaTATGTGGAAAACGATATGCATGTCAATCgcatttaatttatcatagAAAAAGTATTCATCAAAATTGGAAACCCCATAAATGTGAAGTGTGTGATAAAGCATTTGGTCGACGAACATCATTACGGGCACATATGCGATCACATAATGATGAGAAACCATTTCGTTGtacaaaatgtaataaatgtttcGCTCAAACGGGAAATTTAAATCAGCATTTACTTACGATGCACACAAATGAGAAAGCATATAAATGTTTAGAATGTGGTCGATCATATGATTTGGCCGATGAATTAAATCGTCATATGAAAATTCATACCGTACGACCATATCGATGTCATTATTGTAATAAAGACTATACATTATTAAGTAGTTTAGAGACGCATTTGCTTACACGGCATTCAATTGATATtttaattGGAACATGTCGATTATGTTTAAGAAAtgatcaattattattattatgtccAATTTTTGATGCAACAAATCCTCAACAATCAGAAAAGATTTCAACAATCATTGATAATACATTAAAAGTTTCCATTCaacaaaatgataaattacCACAGAAAATTTGTAATGTATGTACggaatttttgtataaaattgatCAATTTCGTAATGATTGCTTGAAATCCCAATTGATTttacaacaatattttattatcaataataatgatgataatgataattgTCAACCATCAAATGATGTTGAAGATGAAACTACTAAATGGGATAATGAAATTAATCATGGAAATAGTGACATTGATACCGGAAATAATGTAATGATTGATATTACTGACAATCCTATGGAATCATCATCAGTAATCGAACAGATGAATATCAAGAAAAGTGTAAATGCCGAATTGATAAATCGATCTATACCAGAAATGCAACCTACAACAATTCCAAAGACTAATGAAATTGATAATcccaatgaaaaaaaatgtgatttttgtTCAATGGTTTATTGTAATATGAAAGAATTAAATGAACACATAAAGGTAATGCATCCAAATGAAGAACTTCATTTATgcattatttgtttaaaaacgTTTAATAGCAAAAAATCTATGGACATGCATTTATCACAGCATCATGGTCTTCATTGTCATAGTTCAGATAAAAAACCCAAAATGTCATCAGGTGTAACAACCAATATAAAATCTTCTCGTGGTGTCAGCATCAAAAAAAAGACAAATgaaactaataataataataataacaaacaattattaacaattaataCTAATAAGTATTATACATGCCGGTATTGTTATGATAACTTTTCCAATTATCATCAGTGGATGGCTCATGAAAAACATTCGCACCCACaacaaaatttaacatttaattttctttgtaGTATTTGTGGAAAAGtgTTTTCAAGACGAAGAGGACTTGATAGACATTCagaaatacataaaaatataaaatatgattgtAAAATTTGTGAAAGACAATTCTCTGGTCGTCAATCATTATCCGTTCATATGGCAAAGCACCAGAATGCCAGTACCCAATTATATCCATGTGAAAATTGTGataaagtTTATGCCAGCAAAAAATCTTTAACGTTGCACGTTAACCGACATCACACAGAAGGAAAACCATGTAAATTAAGGGGACAACAAGatcaaaaattaatgaaaGTAGCATCATTTACTTGTGAATTATGCAATGAATTGTTTCGTTTAAAAAGtgaattaaataatcatatgAAATTGCATCGACCCGAATGTAAATTTGAATGTAAAATTTGTGGAAAACGATATGCATGTCAATCGCATTTAACTTATCATGGTAAAAGTATTCATCAACATTTGAAACCGCATAAATGTGAGGTGTGTCATAAAGCATTTGGTCGATCCATGGGATTGCGATCACATATGCGAACTCATAATGATGAGAAACCATTCAGTTGTAcaaattgtaataaatgttttacacAAGCGGGACATTTAAGGCATCACGTATTTGTGATGCATACCAatgaaaaaccatataaatgCTTAGAATGTGGTCGATCATTTGATTTAACAGATGAATTAAGTGACCATATGAAAATGCATACCATACGACCATATGAATGTCAATATTGTTATAAAGACTATAGCTCATTAAATGGTTTAAATTCACATTTGATTAGAAGGCATCCAAATGAGATGCTCGCCGCAAGCAATAACCCAACTAAATAG
- Protein Sequence
- MDWRNTSSPSIDKPPPTTTTRTNEIDSIIQKNQPNENSHKVYYSLIETCRLCLRNDQLLLLCPIFDATNPQQSEKISTIIDNTLKVSIQQNDKLPQNICNVCTEFLYKIDQFRNDCLKSQLILQQYFIINNNNDNDNCQPSNDIEDENTEGDHGNNRIDDITDNTLERPSVIERINIKKSVNAELIDRSEITEMLPKSTNTTISTNDIDIDIDNQNEKKCDYCSMVYSNMKELNEHIKIMHPNEELHLCIHCLKTFNSNKSMEMHLAQHHHHHHHRRRRRHHHQLDKKPKISPSKINTDIKSNNSKLNENYLLKHYLSTQNDCYYKCNYCYERFPSDVKRIAHEKLSHSEQTRFNCLCSICGKAFRSRKSLAAHMSVHRELSRQLFSCTNCDKAYTNTRSLKKHIERYYVEGQPCKIFGVQSNKELKPPSFSCELCNVMFPLKSVLSDHMKEHRPEYKFQCKICGKRYACQSHLIYHRKSIHQNWKPHKCEVCDKAFGRRTSLRAHMRSHNDEKPFRCTKCNKCFAQTGNLNQHLLTMHTNEKAYKCLECGRSYDLADELNRHMKIHTVRPYRCHYCNKDYTLLSSLETHLLTRHSIDILIGTCRLCLRNDQLLLLCPIFDATNPQQSEKISTIIDNTLKVSIQQNDKLPQKICNVCTEFLYKIDQFRNDCLKSQLILQQYFIINNNDDNDNCQPSNDVEDETTKWDNEINHGNSDIDTGNNVMIDITDNPMESSSVIEQMNIKKSVNAELINRSIPEMQPTTIPKTNEIDNPNEKKCDFCSMVYCNMKELNEHIKVMHPNEELHLCIICLKTFNSKKSMDMHLSQHHGLHCHSSDKKPKMSSGVTTNIKSSRGVSIKKKTNETNNNNNNKQLLTINTNKYYTCRYCYDNFSNYHQWMAHEKHSHPQQNLTFNFLCSICGKVFSRRRGLDRHSEIHKNIKYDCKICERQFSGRQSLSVHMAKHQNASTQLYPCENCDKVYASKKSLTLHVNRHHTEGKPCKLRGQQDQKLMKVASFTCELCNELFRLKSELNNHMKLHRPECKFECKICGKRYACQSHLTYHGKSIHQHLKPHKCEVCHKAFGRSMGLRSHMRTHNDEKPFSCTNCNKCFTQAGHLRHHVFVMHTNEKPYKCLECGRSFDLTDELSDHMKMHTIRPYECQYCYKDYSSLNGLNSHLIRRHPNEMLAASNNPTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -