Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0022 1.3 9.5 0.3 15 30 6 23 2 31 0.74

2 7 0.0021 1.2 9.6 0.2 8 40 28 56 21 59 0.81

3 7 0.00072 0.42 11.1 0.4 6 34 54 83 52 86 0.83

4 7 0.012 6.7 7.2 0.4 13 32 88 108 82 114 0.73

5 7 4.7e-06 0.0027 18.1 0.6 5 40 109 140 105 143 0.88

6 7 3.8 2.2e+03 -0.9 0.3 33 41 161 169 151 171 0.68

7 7 0.093 54 4.3 3.2 14 39 175 197 162 205 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0022	1.3	9.5	0.3	15	30	6	23	2	31	0.74
2	7	0.0021	1.2	9.6	0.2	8	40	28	56	21	59	0.81
3	7	0.00072	0.42	11.1	0.4	6	34	54	83	52	86	0.83
4	7	0.012	6.7	7.2	0.4	13	32	88	108	82	114	0.73
5	7	4.7e-06	0.0027	18.1	0.6	5	40	109	140	105	143	0.88
6	7	3.8	2.2e+03	-0.9	0.3	33	41	161	169	151	171	0.68
7	7	0.093	54	4.3	3.2	14	39	175	197	162	205	0.80

Coding Sequence: ATGCATTCTGATGAAAAACCTTTTGCATGCAAAATATGTGGTAAAGAATTCGCACGAAAATGGCAGTTAACTAGACACAATAGCATTCATTCAGATGAAAAACCTTTTCCTTGCGATATATGTGGTAAAGAATTCACACGAATAGAATACTTAACTAGACACATTCGCATTCATTCTGATGAAAAGCCTTTTCCTTGCGAAATATGCGGTAAAGCATTCAAACGAAAATGGCAGTTAACTATACACAATACCATTCATTCTGATGAAAAGCCTTTTCCTTGCGAAATATGCGGTAAAGCATTCGCACGAAAATGGCAGTTAACTAAACACAATTCCATTCATTCAGATGAAAAACGTTATAAATGCGAAATATGTGGTAAAGAATTCGCACGAAATGATAATTTACGAGCTCACCTTCGCATTCATTCAGATAAAAACCTTATCGATATGAAGTATACGAATACTCTTTCCACCCAAAAACgcaatttaacaaaacatatGAATAAACATAATGATAATTCCAAAAGTACATACATTTGTGATATATGTGGAAAATCATATGAATggaaatcaaatttattatctcattttcaaatatgtaCGGGTAAAACCAAAGAACAAAATCAATCAAACATAAATTTAAGTTCTTCGATAACACATAATAGTTGGTCAAATGCTAACGCAAAAACCGATATAAATCCAAATCAATGTCAATATACATCCGACGATTCATCGCAATGTGATTTAGTCACAAATGTTGGGTCTAATGAATTAATCACACACCAAATGAATAACCAAATCCAATCATTACCATACGACGACCAGAATGAACAAtctattgaaaatatattttcagatGCAATAAATCCTTTAGAAAcaattatagaaaatgtaatGGATGAGGTTGAGCAATCAATGAATGCATTAAATGTGGATTTATTGCTGGACGACCCAACTATACCTACTGTACCAACTGTATCGGCTTTAcaggaaaatgaaaaatcattaCATTCCAAtgcatttgaaaaatttgtatCATTCATTAATGAGGGTCTTCCACCcgataaattttaa
Protein Sequence: MHSDEKPFACKICGKEFARKWQLTRHNSIHSDEKPFPCDICGKEFTRIEYLTRHIRIHSDEKPFPCEICGKAFKRKWQLTIHNTIHSDEKPFPCEICGKAFARKWQLTKHNSIHSDEKRYKCEICGKEFARNDNLRAHLRIHSDKNLIDMKYTNTLSTQKRNLTKHMNKHNDNSKSTYICDICGKSYEWKSNLLSHFQICTGKTKEQNQSNINLSSSITHNSWSNANAKTDINPNQCQYTSDDSSQCDLVTNVGSNELITHQMNNQIQSLPYDDQNEQSIENIFSDAINPLETIIENVMDEVEQSMNALNVDLLLDDPTIPTVPTVSALQENEKSLHSNAFEKFVSFINEGLPPDKF

Sequence clustering based on sequence similarity using MMseqs2