Basic Information

Gene Symbol
Arid2_1
Assembly
GCA_958336335.1
Location
OY284469.1:53684371-53696018[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 6.7e-24 1.3e-20 73.9 0.0 2 89 90 175 89 175 0.95
2 4 1.5 2.9e+03 -0.9 0.2 13 62 863 913 850 928 0.74
3 4 0.53 1.1e+03 0.5 0.0 30 88 973 1028 960 1029 0.73
4 4 2.3 4.6e+03 -1.5 0.9 34 76 1521 1562 1519 1569 0.64

Sequence Information

Coding Sequence
atgttttcTAATACCGCAAAtcaaatggattttttaccaTCCTCGAATCATTCTTTTCATGACGATTCATCTCAAAATCATAATCAACAAGGAACAGTAGTAGCAGCAACAAtaacaacatcatcattaaaTGCCGCCACCATCAatacaccaacaacaacaactgcCGCcgtaacaacaacaacaacaacgacgacgacgaaacCGCAATCGGCCAAGAAAAATAATCAAGGTCGTAGCATGGAATTAATAATAGATGATCGTAATCGTACAACATTCTATAAggatttatttcattttcatgaaTCCAAAGGAACTCCTTTACCACGTTATCCACGAATAAATGGATACGATATTGATTTACATAAACTTTATGGATTGGTTTGCGGACGTGGTGGTTGgacaaaaGTAAATTACAGAAATGAGTGGGATTCCTTGCTGATGGAATTTAATTTACCCGAAAAATGTGTGAATATTTCGGTTgcattaaaacaaatttatatgaGATATTTGGATCGTTATGAAAAGGTACATTTTTTGGGTGAAGATATTGAACGGGTGGATGACGTTGACGATGATAATCGTcataaaaaatggaataataaaGTGTTAACGGAAGTTccattaaaatacaattatcaACAACATAACATTACCGATGGTTTACGATCAACCCATAAATTATGTACAGATTTGTATAAATCCAGTGAATACGAACGTTTATTATTATCGTTAATGTCACCGTTACCAAATGAACAAGATTTTGCCATAAATGTTTGTACGTTGATGGCCAACGAAAGTAAACacacatttaaaattgaaaattgtccACGTCTATTGGATACACTGTTGGCGCACACCGGTGTTTTTTCTCACACATCAATGCGTGAAATATTCGTtgaatattattcaaaaattcgACATAATTCATTGTATGCATTTTGGGCAGATTGTTTACATACGAAACCGGATATATTAGAATTGGCATTCGACGATTACAATCAATTGTCGATTGATAATGGATTTCCGGGAAAAGGACCGTTGGCATTTGTAGCTGGTGGTGGGGGTCgtcataaatttatcaaatccAATCgtcaaaatgattttaatgatgatgctaataataataataataataaaaaagatataaatgaTGCCGGCATCCCTACTATTACTGCTGATGATGAtcattgtaataataataataataataataataacaatgatgatgttgatgatcaACAACAATACGATGATGGTTTAAATATGCATACAAAAGAATATCAAGAATTATTTCAATTggattttttacatttaaatcgTGGTTTGGGTACACACGATTACATTGGCCAACGAATTCATCAGATTGCATCGATATTACGGAATTTATCGTTTCAAGAGGAGAGCCTCATGACATTGGTACGAAATCGTACATTTATACGATTTTTGGTAATGTGTTCGAATGTCCGTTGGTCAAATGTTCATCATATGGCATTGGATATGTTGGGAAATGTTGCGGCTGAATTGGAATTAACGGATCCGTCGGATACGATCACCAGATGTCTTTTGTCAACCATATCCGATGGTTTGGAAAGTCAAGATCGTGGTGTTATCATCAGTTGTCTGGAAATCTTGTATAAATTGTGTCAAAAAGAATCGAATGAcgattatttacataaatgtttaaatcggaaaatttacaaacaaatttgtttatttttaacattaaatgatattatgtTATTGTTGTACACATTAGAATGTATTTATGCATTGAGTGCATTGGGTGAAAAATCATGTATTGCAATTGGACAAGTTAAAGGCGTTATCGATACATTGGTTTCATTGGTGACCGTTGAGgCACAAAGTTATGGACCTGATGGTTGTATTTTGATGAGAGTAGTTGAAACTGTACCGGCCGGTTCAATGGTCAATACAACAAATGCAACGAATATTAATCAAAATCAACAAGGTTTCATCGGTggtggtaataataatacatatacaatgaTGTCAACAGCTACAATAGCGACAGGAGGCGGAGGTACACcaacacaacaacaaatacaattaCCTACTGGATCACCAAATCATCAAGCAGCCGCAGCAGCCGCcgcaccaccaccaccacaatcTCAAATTACATCATCGGCAACAACATCCGGTACGGTGCAATCCGGAATGATTTCAACAAATCCAACGATTTGCCAAACACCGATTATGAATCAAGCTCAATTGAATAGTTTTATTTCaagtaatattataaaaaatcaaccACAACAATTcagtaacaataataataacaacgtTACCGCTACCGccaatacaaatttaaatgtaaatgtaattaataaaataaatactgaacaaaaaattatcaatcaacaacaacaacaacaacaaccaataaataatattcaacaagaacaacatcatcaacagcaacaattaatattaaaacaacaGCAATCAATTGCATTaaaacagcaacaacaacagcagcaacaacagcaaaaaaaaGGTCATACAAATGTTATTAATCATACAAGTCAATTGCAAACGCAATTTGTTCAAATTCAACAACcgcaacagcaacaacagcaacaatcacaacaacaacaagttattattaaaaatgaaatgattaattttacaaatacatCATCAATGGTACAGACGACCggatcatcatcatctataATACAATCAAATACATCAtcgaatataattaataataataataatttaataacatcATCGGTTTCATCATCAATAACTGGaacagcatcatcatcatcatcaacaataataaatccaACTACTAATCAACAAATTATTCAGGAAAATGAACAATTTGCATTGGCATGGTTAAGTGCAACATTTGAAGCGGTATCGACGATGACCACTCGCATTGAACAAAcggatttatataaaatgtttgtgaCGGCCAGTACAAGAGCCGGTCGACCCGCTGTCGTTACAGCTATGCATTTTCCACATTGTGTTCGTTCGGTATTCGGTGCAACGGTTGGTCCAAATCAAGTGAAACTTCGTCAACGATATACTGATATATTGGCAAATTATTATGAAGGTATTCGAATACGATCAAAACCATTGGTACTGTTCCATAAGGGTACGGTTATGcAAAATGTAAATCCTGGTGTTGTTGCTTCAGATCCTGTTGTTAGTGTTAAAAAAGAACCAAAATCACAGATAATTAAACAACCTTGTACAACAACAATgattcaaaatcaattaatatcaCAACAATTGGCTAATCAATtacagcaacagcaacaacagcaacagcagcaacaacaaacAATTACTGCAACTGTTGTTTcatcacaacaacaacaacaacaacaacagctaCAACAACCGAATTCAGTATTAGTTTCACAATTAACGGGTAAAAATGGTCAACAACAAACAACATATACCCAACAAATTGTACAAACACAAAGTGGTGAAAGTCGTATTGTTGTAACGCCAACCACTCAATCGAATAGAactcaacaacaacaacaacaaataatgaACCAAATAAATGTTGGTAGTGTAACGGCAACAATTATTGGTAAATCATCAAATGCACAAATAACATTAGCTGGacaacaaccacaacagcAGCAACCTCAAATGCAATTACAACAAACTGGAGTGATAACATCAACATCTGTACAACAAACACCATCATCGCTTATCAAAAGTCTTTTAGCAAATAAGGTAACTGCAATCgaaacaaataatacaattgtTAATTCGGCTGCATCAATGCAAAGTAGTAGTAATACGTCAATTATTAATGTGCATCAGCAGgTTGCTCAACGAcaacatttacaaaaacaaaaagaaattgcacaacagcagcagcagcagcaattATTAGTAGTTACTAGTAGTTCTAGTAGTAGCATTAACAACAGTACCAGCAACATCAGCAACGCCGCATCAATGATGTCAACAGGAAATATTCCCGTAATAACCGTTTCATCAtcacaacaacatcatcaaaaTCTAACGAAAACATTACAATTTCCATCAACCGTAAATAAACAGCAACAAATGACAATtccatcaacaacaacaacatctCAAACTGTATTGCCTCcattaataccatttaatgtTCAACAACAACcgcagcaacaacaacaacaattgcaATTACAACAGCATCCTTTATCTACGACAATACCATCATCAAATATTATGGTTGCAGTTAAAATGGAAACAAATGAAGATGAAATTATTATTCCAAAAATGGAATTAATAGATGCATTGGATGGCaccaatttaatattaaattgtaacGGATTAAATCCGGATGATTTATTAGTTaaaacaacatcatcattatcatcatcaccagttgtatcatcaaataaaatgttaGCCGATTTATTAGATCGTAAATCAACAGAACCaccatttaataatattatcaatagCGGTGCTGCAACAGCAACAATTAAAACTGAAAGTGGTTATCAAACGGTACCGATTATATTACAACATTCAGGACCGGGAGCCTCAATTTCAAGTGCAAATCAAAACtatcaaatacaaaaacaaataacggctagtggtggtggtggtcaACAGATTTCAATTCAACCAAGTCAAATAATTCAACAAACACAACAGCACCCACAGCAGCAAcagcatcaacaacaacaacaccaacaaacCCAATATGTATTGGCTACAAATCAACAAGgacaaacatatattttagcTCAACAACCATCAAATGCACTTAATCAAACCCAAACCGTATTATTAACACAAACAACTCAATCACAAAGTGGTGGACCaccaacaaaaacaataataatattacaacaACCAAGTAATGGTGGTCAATCACATGCAATACATCAACAACAATTTCAACAacttcaacaacaacaacaacaacaacagcaagGTGGTCAAATTACAATTggtacaaataataataataacagcaataataatagtaataattcaCAACAAAAAGTAATTATGACAACACAACAAGGTCAACAAATGATTGTAACTCAAATGCCACGTCCCGTTcaacaacaaattattatgCAACATCATCCATTAGGACcgggtaataataatattatacagcagcaacaacaacaaccacaacaaacATCAACAATTGTTCAAAATCCTTCAATTCAATCAACACAATCACCAcaaacaattcaaattcaacaaTCCCCTCAATTATTAACCCAAGCTCAATTACATCAACAATTACATCAGCAATTGcagcatcaacaacaacagcaacaacagcaacagcaacagaagcaacaacaacaaatgattGTATCATCAGCTCCACAAATTCCACAACAAATTTCACTTCAACCACAAAGTCATTTAAATGTTCAATCCGTTTCATCAACTCCATCATCATCACCGGTTttatcatcatcttcatcgaCAATTTCCGTTTTATCACAATCGGAATTTGCCGGATTACAACAGCaccagcaacaacaacaacaacagttATTATTGcatcagcaacaacaacagcaacaacaacaacaacaacaacaacaacaattgcaACATCTCGTTGAAAagaaacaaatatttataactgGCAGTGGTAATATTGAATTAACtgaaatacaacaacaaacaaaaatgaattcCACAATTGTTGGGACAACAGTTACTACTGCCGGTGTGGCTTCTGCTAATATAACCGTAAATGCATCATCAAATGTTAGTGCGAAAGTACAGCAATCTCATGGTGTTGGAACACAACAAACCATCGGTATGGTTCAACAACAGCCACAATCGCAACCACAACTGCCACTGCAGCGACAACAACAAGAATTAGTTCCAAAAACAATTCATGAATATTTACAAGAAAAACAACAagttcaacaacaacaacaacaccagcCGCAACAACCAAAAATTGTAccacatcaacaacaacaaatgcaACAACAGCCACAGTCACAAGCATCGCAACAGCAGCCACAGTCCCCAATGACCAATCAATCAAAACCGcaaaatgcaataaataatCAACAATTGCTTACGGTACAAGTTGATGAAGACTATGATCCGTCATGGTTATTCGTTTGTGATTGGCGAGGTTGTCCCAGaaaaaaattccGTTCAATAAATGATGTTTATGTGCATGCATGTCAAGTGCATTGTCCCGATAATATTGATCCAAATGCCGAAATTTATTGTCAATGGGGTCTTGGACCAAATTTATGTGATAATTTACCACGTAAACGTTTTTCATTAATGACCCATCTATTTGATCGTCATTGTACAATTGAATCATTTAATGCTGCCGTTCAACGACGTGCGACAACCATTGGATCATTACCAAATCAACCAACATCACCGgttacaattataaaaaatccaataacACCACCATCAAATGAACAGAATTCAAAATCAGCTTCTAATAATGGTGCGAttgcatcatcatcatcagcagcaGGAGCAGGAGCGGGAACAAATGTTAATTCATCGACAGCTGCAAGTGCTGCAATGCAAGCAATAAAACGTCATGCACTTGATTTTCTAAATCCAAAGGAGTTATTGgATGAAAATGAAGGACCTGTAACGAAAAGTATTCGATTAACGGCTGCATTAATTTTACGTAATCTTGTTATTTATACGAGTAATGCAAAAAAAAGTCTACGGTTTTATGAACAGCATTTGTCCGGGGTGGCATTGAGTAATGTTGAAGCGAGTCGTACAATTGCTCAGgtattatatgaaatgaatgatAAGTAG
Protein Sequence
MFSNTANQMDFLPSSNHSFHDDSSQNHNQQGTVVAATITTSSLNAATINTPTTTTAAVTTTTTTTTTKPQSAKKNNQGRSMELIIDDRNRTTFYKDLFHFHESKGTPLPRYPRINGYDIDLHKLYGLVCGRGGWTKVNYRNEWDSLLMEFNLPEKCVNISVALKQIYMRYLDRYEKVHFLGEDIERVDDVDDDNRHKKWNNKVLTEVPLKYNYQQHNITDGLRSTHKLCTDLYKSSEYERLLLSLMSPLPNEQDFAINVCTLMANESKHTFKIENCPRLLDTLLAHTGVFSHTSMREIFVEYYSKIRHNSLYAFWADCLHTKPDILELAFDDYNQLSIDNGFPGKGPLAFVAGGGGRHKFIKSNRQNDFNDDANNNNNNKKDINDAGIPTITADDDHCNNNNNNNNNNDDVDDQQQYDDGLNMHTKEYQELFQLDFLHLNRGLGTHDYIGQRIHQIASILRNLSFQEESLMTLVRNRTFIRFLVMCSNVRWSNVHHMALDMLGNVAAELELTDPSDTITRCLLSTISDGLESQDRGVIISCLEILYKLCQKESNDDYLHKCLNRKIYKQICLFLTLNDIMLLLYTLECIYALSALGEKSCIAIGQVKGVIDTLVSLVTVEAQSYGPDGCILMRVVETVPAGSMVNTTNATNINQNQQGFIGGGNNNTYTMMSTATIATGGGGTPTQQQIQLPTGSPNHQAAAAAAAPPPPQSQITSSATTSGTVQSGMISTNPTICQTPIMNQAQLNSFISSNIIKNQPQQFSNNNNNNVTATANTNLNVNVINKINTEQKIINQQQQQQQPINNIQQEQHHQQQQLILKQQQSIALKQQQQQQQQQQKKGHTNVINHTSQLQTQFVQIQQPQQQQQQQSQQQQVIIKNEMINFTNTSSMVQTTGSSSSIIQSNTSSNIINNNNNLITSSVSSSITGTASSSSSTIINPTTNQQIIQENEQFALAWLSATFEAVSTMTTRIEQTDLYKMFVTASTRAGRPAVVTAMHFPHCVRSVFGATVGPNQVKLRQRYTDILANYYEGIRIRSKPLVLFHKGTVMQNVNPGVVASDPVVSVKKEPKSQIIKQPCTTTMIQNQLISQQLANQLQQQQQQQQQQQQTITATVVSSQQQQQQQQLQQPNSVLVSQLTGKNGQQQTTYTQQIVQTQSGESRIVVTPTTQSNRTQQQQQQIMNQINVGSVTATIIGKSSNAQITLAGQQPQQQQPQMQLQQTGVITSTSVQQTPSSLIKSLLANKVTAIETNNTIVNSAASMQSSSNTSIINVHQQVAQRQHLQKQKEIAQQQQQQQLLVVTSSSSSSINNSTSNISNAASMMSTGNIPVITVSSSQQHHQNLTKTLQFPSTVNKQQQMTIPSTTTTSQTVLPPLIPFNVQQQPQQQQQQLQLQQHPLSTTIPSSNIMVAVKMETNEDEIIIPKMELIDALDGTNLILNCNGLNPDDLLVKTTSSLSSSPVVSSNKMLADLLDRKSTEPPFNNIINSGAATATIKTESGYQTVPIILQHSGPGASISSANQNYQIQKQITASGGGGQQISIQPSQIIQQTQQHPQQQQHQQQQHQQTQYVLATNQQGQTYILAQQPSNALNQTQTVLLTQTTQSQSGGPPTKTIIILQQPSNGGQSHAIHQQQFQQLQQQQQQQQQGGQITIGTNNNNNSNNNSNNSQQKVIMTTQQGQQMIVTQMPRPVQQQIIMQHHPLGPGNNNIIQQQQQQPQQTSTIVQNPSIQSTQSPQTIQIQQSPQLLTQAQLHQQLHQQLQHQQQQQQQQQQQKQQQQMIVSSAPQIPQQISLQPQSHLNVQSVSSTPSSSPVLSSSSSTISVLSQSEFAGLQQHQQQQQQQLLLHQQQQQQQQQQQQQQQLQHLVEKKQIFITGSGNIELTEIQQQTKMNSTIVGTTVTTAGVASANITVNASSNVSAKVQQSHGVGTQQTIGMVQQQPQSQPQLPLQRQQQELVPKTIHEYLQEKQQVQQQQQHQPQQPKIVPHQQQQMQQQPQSQASQQQPQSPMTNQSKPQNAINNQQLLTVQVDEDYDPSWLFVCDWRGCPRKKFRSINDVYVHACQVHCPDNIDPNAEIYCQWGLGPNLCDNLPRKRFSLMTHLFDRHCTIESFNAAVQRRATTIGSLPNQPTSPVTIIKNPITPPSNEQNSKSASNNGAIASSSSAAGAGAGTNVNSSTAASAAMQAIKRHALDFLNPKELLDENEGPVTKSIRLTAALILRNLVIYTSNAKKSLRFYEQHLSGVALSNVEASRTIAQVLYEMNDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-