Basic Information

Gene Symbol
nfxl1
Assembly
GCA_947459985.1
Location
OX381627.1:1790499-1792970[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 2.6e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 18 0.014 1.9e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 18 3.1e-07 0.0041 17.6 15.5 3 19 186 202 185 202 0.95
4 18 5.2e-08 0.00068 20.1 12.5 3 19 239 255 237 255 0.92
5 18 1.7 2.2e+04 -3.9 1.9 6 10 280 284 279 284 0.83
6 18 7.5e-08 0.00098 19.6 12.6 1 19 290 308 290 308 0.99
7 18 7.6e-06 0.1 13.2 19.4 3 19 345 361 337 361 0.86
8 18 2 2.6e+04 -5.3 2.2 5 10 384 389 384 389 0.88
9 18 5.9e-06 0.078 13.6 18.3 1 18 395 412 395 413 0.97
10 18 4.5e-10 5.8e-06 26.7 14.0 1 19 422 440 422 440 0.99
11 18 0.00016 2.1 9.0 6.1 9 19 488 498 486 498 0.89
12 18 0.011 1.4e+02 3.1 7.0 1 12 508 518 508 518 0.90
13 18 0.35 4.5e+03 -1.7 3.6 14 18 547 551 547 552 0.87
14 18 0.2 2.6e+03 -0.9 0.1 8 12 568 572 567 573 0.82
15 18 9.1e-06 0.12 13.0 5.3 1 11 588 598 588 599 0.97
16 18 2 2.6e+04 -7.4 4.2 6 10 616 620 613 620 0.66
17 18 4.9e-05 0.64 10.6 14.7 3 18 629 645 628 646 0.86
18 18 2.7e-05 0.35 11.4 11.3 1 15 687 700 687 706 0.88

Sequence Information

Coding Sequence
ATGGCGCGACGATATAGAGATGCTGCTGCAAAAATGCAGCAAAATGTTCAAAAGCATTTGAATGAAATGAAGGAAATATCATCATCAGAAGACGAGGATCCTTGCGAATCAAGTGTCTTAGAAGGAGTGTTCCAGAGTTACTGGCGGGGTGGCGGAGATACTCATCTGCTGAACAGGACCAAAAACCTGCTGGAAGAAGCAATTAGCGGCCGCGCTGTAACTTGTCTGATATGCATAGGATCCATCAAAAAAACTCACGCTATATGGACATGTGATCATTGCTATTCCTATTTTCATCTATCTTGCATACAAAAATGGTCGAACGACAGTATAAGCTTGCGTAGCGAAGAAAGTCAGGGCCCAATAACTGTATTTAAACTACAAAAAATTGAATGGTGCTGTCCTAAGTGTAGACACTCATATTCTAAAGAAGAAATACCGCGCAAATATCGCTGCTTCTGTGGTAAAACTGATGATCCACAAAATCATCCATGGCTTATACCTCACACTTGTGGAGAAGTTTGTGAAAAAAGACTCTCAGCTGGTGAAAACTGTAAGCATAGGTGCTTACTCTTATGCCATCCTGGTCCTTGCCCACCTTGCCCTCAAACTGTTAATGGAGTATGTTTTTGTGAAAAAGAACGAAAGAGAGTGAGATGCAGTGCTGCCAAATGGTCTTGTGGGCAACTTTGTAAAAGGACGCTTTTGTGTAAGACTCACAAATGTGAAAATTTATGCCATGAAGGTGACTGCCCTGAATGCAGCTACACTAGTATTCAACCATGCCAATGTGGTACTGAGAAAGCTAAAAGACCATGCAATGACCCAGCTTGGCAGTGCAAGAAGCCATGCAACAAATTATTTGCATGTGGCTACCATAAATGCGATAAAATCTGCCATTCAAGCAACTGTGGGCCCTGCCCCAACTCTGGAATGACATCATGTCCATGTGGAGCTAACCAACGCTTTGTACAATGTCCAGATGTTATGGAAACCTGCTTAGGCACATGTGGTAAAAGACATGAAGACTGTGAACACAGTTGCCCAGAAAAATGCCACAAAGGACAATGTCCCCCTTGCCAAGTCTTAATACAAAAGAAATGCTACTGCTCAGCACATACAAGGTCTCTTCCATGTAGCAAGGAGTTCAAATGTGAGACAAAATGTAGAGGAATAAGACCATGCGGTAAACATGGCTGTGCACGAAAATGCTGCAATGGAAACTGCCCTCCATGTGAGAAAATTTGTGATAAACCCCTTCAATGTGGCAGACATAAGTGCACAAATATATGCCATCGTGGACCATGCTACCCATGTCCTAGAGAATCAAAAGTGACCTGTAGATGCAAGGAAACTTACATCACAGTCCCATGTGGGAGGGAAAGGCAGACTAAACCTCCAAAATGCAGTTTGCCATGCAAAATTAAATACAAATGTGGTCACAGTGAAGACAATAAGCATTCCTGCCATTTTGGTGACTGTCCACCATGCAGAGCAGTTTGTTACAAACTATATCCAAAGTGCAGCCACCAATGTAAAGTAGTGTGCCATGAATATGTTGCAGTACTTTTTAAACAGATTGAAAAGCCAGCTACCCCTTGGGAAGTGCAACCACCAAAGACTAAAATAATGACTTTAGATTGTCCACCATGTGACACACCAATACCAATTATTTGCTTTGGAGAACATGAGACAGACAACCAACCTTGCCACTCAGCTACTCGGAGACCATGTGGAAGAGAGTGTGGCCGGCCATTGGCTTGCGGTAATCACAAATGCACTTTACTCTGTCATCTCTACGGTTCTGATCCTGAGTATCCAAATGTGCCTTCAAGTTGCAAGCAATGTGAAAGAGAATGTTCAGTTCCTCGTCCTGAAAAATGCACACACAAATGTTCGATTCGAGCCTGTCATCCCGGTCCATGCCCACCATGTGAGATATTAGAGCGTTTAGCCTGCCACTGTGGTATAACAGAGATTTACTTACGTTGCCGGGAAATATCTGTAGCAACTGAGGAAATGTTGTCATGCAAGCAACAATGTCCCAAAAACTTGGAATGTGGCCACCGCTGCCGTAACACTTGTCATGTTGGAGCTTGCTGCAACCAAGTGTGCACTAAGAAAACCAAAGTTCACTGCCCATGTGGTAACATAAAGAGGGAAGCTCCTTGCAACTCAGTTAGAAATGGTGACATAAAAATATTATGTGACAATAACTGTGAATCCAAAAAGATTGCTGCAAAATTAGAGAACGAGAAAGAAAAACAGAGACTAAAGGAGTTAGAGGAAGAGAAGAACCGCAAAGAGTTAGCAGAATATGAGTGGAAATTGAGCGGCAAAAAGAAGAAATATAAGGAGAAGAAGTCTGTTTCTAGTAAGGATGATAGAGGTTTGTTAAAGAAGTATTGGATACCAGTATCATCGTTCCTAGTGGTGCTGGTAGCTGCTTTTTATTATATATTTTATGTATAA
Protein Sequence
MARRYRDAAAKMQQNVQKHLNEMKEISSSEDEDPCESSVLEGVFQSYWRGGGDTHLLNRTKNLLEEAISGRAVTCLICIGSIKKTHAIWTCDHCYSYFHLSCIQKWSNDSISLRSEESQGPITVFKLQKIEWCCPKCRHSYSKEEIPRKYRCFCGKTDDPQNHPWLIPHTCGEVCEKRLSAGENCKHRCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSAAKWSCGQLCKRTLLCKTHKCENLCHEGDCPECSYTSIQPCQCGTEKAKRPCNDPAWQCKKPCNKLFACGYHKCDKICHSSNCGPCPNSGMTSCPCGANQRFVQCPDVMETCLGTCGKRHEDCEHSCPEKCHKGQCPPCQVLIQKKCYCSAHTRSLPCSKEFKCETKCRGIRPCGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTNICHRGPCYPCPRESKVTCRCKETYITVPCGRERQTKPPKCSLPCKIKYKCGHSEDNKHSCHFGDCPPCRAVCYKLYPKCSHQCKVVCHEYVAVLFKQIEKPATPWEVQPPKTKIMTLDCPPCDTPIPIICFGEHETDNQPCHSATRRPCGRECGRPLACGNHKCTLLCHLYGSDPEYPNVPSSCKQCERECSVPRPEKCTHKCSIRACHPGPCPPCEILERLACHCGITEIYLRCREISVATEEMLSCKQQCPKNLECGHRCRNTCHVGACCNQVCTKKTKVHCPCGNIKREAPCNSVRNGDIKILCDNNCESKKIAAKLENEKEKQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKSVSSKDDRGLLKKYWIPVSSFLVVLVAAFYYIFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932106;
90% Identity
-
80% Identity
-