Dcae002912.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- -
- Assembly
- GCA_947459985.1
- Location
- OX381633.1:5351939-5379783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.018 1.5 10.0 4.5 1 21 424 444 424 446 0.90 2 9 1.1 90 4.3 4.8 1 23 453 476 453 476 0.93 3 9 0.0068 0.56 11.3 0.4 2 23 510 532 509 532 0.93 4 9 0.53 43 5.4 0.1 2 20 545 563 545 565 0.84 5 9 1.5 1.2e+02 3.9 2.4 2 23 616 638 615 638 0.93 6 9 0.57 46 5.3 1.8 2 19 654 671 653 675 0.80 7 9 1.6e-05 0.0013 19.6 4.3 1 23 681 703 681 703 0.98 8 9 2.8e-06 0.00023 22.0 2.9 1 23 708 730 708 730 0.98 9 9 0.00028 0.023 15.7 4.7 1 23 736 759 736 759 0.93
Sequence Information
- Coding Sequence
- ATGAGGTGCAACGTTCCCTATTGCACTAGTGACTCAAAGATATCCAACAAAAGCCATGGAGTCTCATTTCATATGTTCCCCAAAAACCCTAATATTCGTAAAACATGGGTTCAAGCCCTTGGAACAACAAACTGGGAGCCGAAAGAGGGCAATGCAATATGTTCAAAACACTTTAGAGAAGTGGATTTCTATGAGACAAAGCATGGACTACAGAGGATACATGATGGGGCAATACCTGTTAAGATAATAGTATGCAGGATATGCCTCGCTGTGCATACCAAAATGTATAATATTACAGAGTTCGGTGAAGTGTTTGGACAAATAACAGGCATATCGGTGGACGATTCGGACGCCAGGAGGCTACCACGGCGCATATGTTGGGAGTGTGCTGCGCGGCTTACCGCCGCAGGTTCTTTCAGGGCCAAAGCTCTGCTCAGCGACGGGCTGCTATATGATCTACTGCAGCCAGGTACATATTTAAAAATACGCGACGTAAAATCAGTAAACCGGAATCAATATGGTTTAAAAACATCCCTAGTTCAGAAAGTATTTGACTGTGAACACTACGAATTAAAAGTACAGGACACTTTTGTTGAAACTGTTTATCACTCATCTGATGTAGAAGGATGTGATGAGGATGATAATGGAGAAATCGCTGATATACACCACGATGACGACATTAAAAAGGAAGTAACTTCAAATATATACCAAAATGATGACATAGTTAAAGATACTGTTGTAATATCACAAAGTGGTGACATGGAAACTGAAGATTATGAAGGTCTATTAGATTTACAGTATGATGACTCCAAAACATATATACATTATGAAAACATCGAGGTTGGAGACAACGATTTAGGTACAACCGAAATCGGGCGAACCGAGATTGATGAAGGGAGCCGAGATGGCATAATTTCTGGAGAATATACCTCTTCGGGTCAAGTTGCTACAGACACTGAAAGTAATTATGATGTAATACCTGATACAGAAGCCGAAATCACAGATGGAGATAGTGATAATGAAATACTTGGGGAATTTGAAAATGTGAATTTTAAGGATACCGAAGTTGTTAAAACGGTTCCACTTAAGAGGACAAGAAGGAGGCATGTTCCAGACGATTCAGACAACTTCAGTAACGCCCAAGCCAAACGACGAATAAATTACATCCCTATCGACGAAAATCTGTTTGAAATCATAAAACTATCGTACGACCAACAAGCAGAAGAAATAGAGAAACGCCAAGAAAGTGCTAGCTATATCAACGCTTCATACAAGTGCACCGTGTGTTATCGGGGATTCAAGAACAAGGACACATATGAAACACACTGTGCTAGGCATAGTAAGCAAGCCGGTGCGTACGAATGTTTTATCTGCAAAGGTCGTTTCAAGCATGGTTGCAAGTTGCGGTCGCACCTGACCGCACAGCATGCGGCCGAGTATAACTGTAGAAAATGCGGCTTCGTTACTAGACATAGAAAACATTCCTCATACTTCAGCCACATGCGCTTGTATCATATGCCCAGCTGCGTGTGCGAGCTATGCGGCTACACGTTTGTTAGTAGTATTGGCGTACAAGCACACAAGGCAAGGAAACATAAATTTGTCGATAAAACGAAGATACTAGAAGGACCGTACTGCGAGGTGTGTGATGTTACGTTCGCATCACAAGAAGCACATGACAGACATCTGAAGTTATCTTCTAAACATGTAGAAGATGAAGATGATCCCATACGCATTAGGAATGAACCCGTACCAGTAACTAAGAGCGACCGTTCATACACACCTCACAGACGGAACCAGGATGGCACGCGTACACGGAAGCACGAATCAAATGAAAACAGAGTCCAATGCGAACTGTGCGACATCAAGTTACGCAACTTCCATCATTATGTGTTGCACTTCGAACGCGATCATCCGGGAATAATCAGGGCGCAGTATCCACCGATGAAATACCCTAGCATGTGTGAACACTGCGGCAAGATATTCCAGTGTAAAATGCTTCTAGAAAGTCACAAATGGGTCCACACTGGTCAGAAACGGTACAAATGTGACCAATGCAACAAAAGCTTTAGCCAAAAGACCACCTATATACAACACAAGCGTAATCACGGCGGCAACCCGTACAAGTGCAAAACTTGTGGCAAATTCTTTTCGAACTTCCCTAATATGAAGAGGCACATGACTATACACACGGGGCTTAAACCTTTCAAATGCGATACATGCGGGAAGTGTTTCAAGACATCCGGCGAAGTTCGTTCACATAGCAATCATGTCCATTACAAAAAACCCTGGCCCAAGAAGAAAACCAAGAAGATAAAGTCCAACGTGACCACTGAAGAAGATTAG
- Protein Sequence
- MRCNVPYCTSDSKISNKSHGVSFHMFPKNPNIRKTWVQALGTTNWEPKEGNAICSKHFREVDFYETKHGLQRIHDGAIPVKIIVCRICLAVHTKMYNITEFGEVFGQITGISVDDSDARRLPRRICWECAARLTAAGSFRAKALLSDGLLYDLLQPGTYLKIRDVKSVNRNQYGLKTSLVQKVFDCEHYELKVQDTFVETVYHSSDVEGCDEDDNGEIADIHHDDDIKKEVTSNIYQNDDIVKDTVVISQSGDMETEDYEGLLDLQYDDSKTYIHYENIEVGDNDLGTTEIGRTEIDEGSRDGIISGEYTSSGQVATDTESNYDVIPDTEAEITDGDSDNEILGEFENVNFKDTEVVKTVPLKRTRRRHVPDDSDNFSNAQAKRRINYIPIDENLFEIIKLSYDQQAEEIEKRQESASYINASYKCTVCYRGFKNKDTYETHCARHSKQAGAYECFICKGRFKHGCKLRSHLTAQHAAEYNCRKCGFVTRHRKHSSYFSHMRLYHMPSCVCELCGYTFVSSIGVQAHKARKHKFVDKTKILEGPYCEVCDVTFASQEAHDRHLKLSSKHVEDEDDPIRIRNEPVPVTKSDRSYTPHRRNQDGTRTRKHESNENRVQCELCDIKLRNFHHYVLHFERDHPGIIRAQYPPMKYPSMCEHCGKIFQCKMLLESHKWVHTGQKRYKCDQCNKSFSQKTTYIQHKRNHGGNPYKCKTCGKFFSNFPNMKRHMTIHTGLKPFKCDTCGKCFKTSGEVRSHSNHVHYKKPWPKKKTKKIKSNVTTEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00450190;
- 90% Identity
- iTF_00450190;
- 80% Identity
- iTF_00450190;