Dcae002959.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- Bcl11a
- Assembly
- GCA_947459985.1
- Location
- OX381633.1:6402669-6415897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5 3.7e+02 2.4 3.5 1 23 256 278 256 279 0.92 2 11 1.3 1.1e+02 4.1 1.7 3 23 288 309 286 309 0.93 3 11 0.14 11 7.2 1.7 2 23 314 336 313 336 0.96 4 11 0.022 1.8 9.7 3.2 1 23 340 363 340 363 0.98 5 11 0.00021 0.017 16.0 1.3 2 23 367 389 366 389 0.96 6 11 0.0026 0.21 12.6 2.6 2 23 393 415 393 415 0.97 7 11 0.05 4.1 8.6 1.9 2 21 429 448 428 453 0.92 8 11 8.2e-05 0.0068 17.3 0.2 2 23 462 484 461 484 0.95 9 11 0.0055 0.45 11.6 2.8 1 23 490 513 490 513 0.95 10 11 0.00018 0.015 16.3 0.9 3 23 524 544 523 544 0.98 11 11 0.00011 0.0092 16.9 1.3 1 23 550 573 550 573 0.98
Sequence Information
- Coding Sequence
- ATGGATATAAAGATTGAACATGAACGTTTGTTCACGTTATGTCAAGGCTGTTTGAGCGCAGACAGAAAAATCGCATTCATAACTGACCAAAATAAGGCACTATTTTTAAAATTAAGAGAGGACGTTAATCTGAATCAAGATGAACCAAAGGAATTGCAATTGTGTTGGGAATGTAATGCGTTACTGAACAAAATGAAATATTTTCAAGCTCAGATCAAAACTGCACAGTATTTATTAATTCGGTATATACAAAAATTATATCATAAGGGTGAAAGACCTCACACATTATCATCACTAAAAACTAAACAAACAAACAACTATGACCACAAATTCATCTATAGAGAAGAACAAAAAGATGTAATACTTGTACAAAAGGACCAAACACTGGTACAAAAAGACCAAATACATCAGAAAAAAGAAACAACAGACCACGAAAACTTACTATTGGACATTAAAGTAGAACAAAACGATAGTGATACAATAAAAGAAGAATATGACAATGCTAGTAACGATAATGCAGATGACTATCAACCAGAACTTAAAATGGAATCAGATCTGAACTCAATTGTTGACCGTAAACCAACCAAATCAGAAATCAAGAAACTATCTATTAAGGCATATGAAAAATATGCAACAGTAACAAAAAATAATGATTTCAATCCAAAAAAAGTTGGTCTGTATTCTGAAACTGTGTTTTTAATGGAGACAGAGATAGAAGAGATATTAGATAGAGACAGAAAATGTATGGGTTATGAAAGAATGCCGTTCAAGTGTATAGACTGTACCCTTGGTTATAAGAAGCGATTGGATCTACTGAGGCATAAAACTTTTCACCATAGAAAGACTCAATTCCCAAGCCCCTGTACAGCTTGCAAGAGACACATTCACTCGGAGTCAGAATTACAAGAACATTGGAGAGACAATCACAGTCCCATGTTAAGGTGTACCCTCTGCCTAGAGCTGTGTCGAAGTAACGGAGAGATGAGGAAGCACTTAAATAGGGCGCACACTAAAACATATACTTGTAACAACTGTCATGAAGAGTCAAGAACTCTACGACAATTCAGCGACCACTATAAAATGGTCCACGAGCGGGTCGTGTGTGATTATTGTAATTCGAGTTTTTCATCGAAAAGGAGGTTGGAGTCTCACATCAAACGAAAACACCTCCCAGCGTACTGCTCAGTCTGCAACCGAACCTACAGGACCTATCACGTCTTCGAGAACCACGTCAGGACCTACCACCCAGAGCTGATGTCCTGTGACACCAGGAAAGAGATGTGCTACTGCGTGGAGTGTGACAAGCAGTACCCTAGCATTTATAAGTACAGAAGACATTTACAGCAATCGGCGAGACACAGACCTAGGAAGAAAATCAGAGTACCGTGTCCGGAATGTGACAAGATTTTTACTAGGACTGCATACATGAATAACCACTTTCGACAGGTGCATATGAGGGATACCAAACACTACTGTGATCTATGTAATAAGCACTTCGCAACAGGCTACGGCGTTCGCAAGCACATACAGTACGTCCACCAAAAGATAGCGGTGCCGAAGGACAAGATATGTGATCTGTGCGGAAGGGGATTCAGTACAAACAGAATTCTCAAAAACCATCGTCGGACGCACACCGGTGAAAGACCGTTCAAATGCAAGTACTGTCCCGCCACATTCGCCCAAGATACTGCAATGAAAACGCACCAGAAGACACAACATAAGAGCATAATACAACTGCCCAGCTGA
- Protein Sequence
- MDIKIEHERLFTLCQGCLSADRKIAFITDQNKALFLKLREDVNLNQDEPKELQLCWECNALLNKMKYFQAQIKTAQYLLIRYIQKLYHKGERPHTLSSLKTKQTNNYDHKFIYREEQKDVILVQKDQTLVQKDQIHQKKETTDHENLLLDIKVEQNDSDTIKEEYDNASNDNADDYQPELKMESDLNSIVDRKPTKSEIKKLSIKAYEKYATVTKNNDFNPKKVGLYSETVFLMETEIEEILDRDRKCMGYERMPFKCIDCTLGYKKRLDLLRHKTFHHRKTQFPSPCTACKRHIHSESELQEHWRDNHSPMLRCTLCLELCRSNGEMRKHLNRAHTKTYTCNNCHEESRTLRQFSDHYKMVHERVVCDYCNSSFSSKRRLESHIKRKHLPAYCSVCNRTYRTYHVFENHVRTYHPELMSCDTRKEMCYCVECDKQYPSIYKYRRHLQQSARHRPRKKIRVPCPECDKIFTRTAYMNNHFRQVHMRDTKHYCDLCNKHFATGYGVRKHIQYVHQKIAVPKDKICDLCGRGFSTNRILKNHRRTHTGERPFKCKYCPATFAQDTAMKTHQKTQHKSIIQLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -