Basic Information

Insect: Diloba caeruleocephala
Gene Symbol: RREB1
Assembly: GCA_947459985.1
Location: OX381633.1:5452485-5473831[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.053 4.3 8.5 0.5 1 23 219 241 219 241 0.99

2 11 0.00048 0.039 14.9 0.8 1 23 248 270 248 270 0.97

3 11 0.17 14 6.9 1.8 1 23 274 296 274 296 0.94

4 11 0.0043 0.36 11.9 1.2 1 23 301 324 301 324 0.97

5 11 0.0041 0.34 12.0 0.1 2 23 329 351 328 351 0.93

6 11 0.0035 0.29 12.2 0.5 3 21 365 383 364 388 0.94

7 11 0.98 80 4.5 0.2 2 23 432 454 431 454 0.95

8 11 0.0053 0.43 11.6 0.1 2 19 470 487 469 491 0.92

9 11 4.7e-06 0.00039 21.2 2.2 1 23 497 519 497 519 0.99

10 11 3.3e-05 0.0027 18.6 2.7 1 23 526 548 526 548 0.97

11 11 6.4e-05 0.0052 17.7 4.3 1 23 554 577 554 577 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.053	4.3	8.5	0.5	1	23	219	241	219	241	0.99
2	11	0.00048	0.039	14.9	0.8	1	23	248	270	248	270	0.97
3	11	0.17	14	6.9	1.8	1	23	274	296	274	296	0.94
4	11	0.0043	0.36	11.9	1.2	1	23	301	324	301	324	0.97
5	11	0.0041	0.34	12.0	0.1	2	23	329	351	328	351	0.93
6	11	0.0035	0.29	12.2	0.5	3	21	365	383	364	388	0.94
7	11	0.98	80	4.5	0.2	2	23	432	454	431	454	0.95
8	11	0.0053	0.43	11.6	0.1	2	19	470	487	469	491	0.92
9	11	4.7e-06	0.00039	21.2	2.2	1	23	497	519	497	519	0.99
10	11	3.3e-05	0.0027	18.6	2.7	1	23	526	548	526	548	0.97
11	11	6.4e-05	0.0052	17.7	4.3	1	23	554	577	554	577	0.95

Sequence Information

Coding Sequence: ATGTTGGTGAATTCAGAGACTGTTTCTAGCACGATAGGCGCCGCTGTTATTAAGCCTGGAGTATTTAAGCTGGCTAACGGCGACTTTAGGATGCCGAACCGCGTTTGCTGGGAGTGTGGCGTAAAACTGGCTGCGGCGGCATCCTTCAGAGCCAAGGCTCTGCGCAGTGAAGAGCTGCTCAAGGAACTATTACACCCTGAAGTCTTCACAGATCCAGACGTCTCGTCAATAGACCGTGAAGCAAATAATTTAACGTCGAGTCTGAAACCAAAAATATTTGAAGCAAACCATGTCGACTATCACTTTATATACACAGAACCTATACACACAAACATATTACAAGACATACACGAAATTAACCTGCCCGACATAGAAATCGAATCTGAAGAACCAATATCTGCTTACAATGACTCTTCTAACGACGAAACAGTTTTTATAAAAAGCAAGAAAGTCAAAAAGAAAAAGAGCACACACATAGTCGGGGAAGTCGAGAGAGTCGAAGAAGTCGGCAAAGTCAAAAAAGACGACAAGCGCTTTAAACCGGCAAATGAAGTGTTAAATGATGATATTTTTAATATAACCGACTTAACGCACGAACAACAAATGTATGAAATCCAGAAAAGACAGAATTCCTCTAATTATAAAAATTCCGAGTATAAATGTACTGCCTGCTTCAAGGGGTTTCTGGATGAAGACGCTTATAAGGGACATATGAACAGACACACAAATCAATGTGGTACTTATGAATGCCAAATTTGTAAGATCCGCTTCAAAAAGCTTCAGGCCCTCCGCAACCATGCGACATCCCACATGCAGAAGTTCAGCTGCAAGAGATGTCCATACGTAACTTCCAGGAGACATGCAGCGAAACTACATGAAGAATATCACAATGGAACTCGGTATGAATGCCCGCATTGCTTAGAGAACTTTGATAAAATTTCCACATACATGAGTCATGTCCGCATCAAGCACCCTTCGGACATCGTATGCGAACTGTGTGGGTACTCCTTCGTCAGCGCCAAGGGCTTAGGACTTCATAAGAAGCTCAAACATCGATTTGATGACCATCAAGTACCAGCGGACGGGCCATGCTGTCCCAAATGTGATGTTCAGTTCATTAGTACGGAGGCTTTAGAAAGACACATTCAGTTGTCGGGGAGACACAGTGAAGAATCCGAAACCAAAAGAAGACGGTCCCGTCGTCCCCGAGAACTTCACGATATAAACGGTACAAGACAGAAGGATACAGAGCAGAAGAAGAAACGCAACAGCTGCAACACTGAAGGACCTATATCGTGTGAACAGTGTGAGATGCAACTTCCCGATCCTCTATCATACTACAGGCACTTCAGAAGAATGCACCCGGATAAGAATCGAACTAAATACCCTTCAATGAAGTCCAAAAGTATGTGCGAGGTCTGCGGCAAGATGTTTCAGAGCCTAGCCCTGCTGCAGGACCACAGCTGGACCCACACGGACTCCAAGCACTTCAAGTGCTCCGTGTGCGACAAGCGCTTCCAGCGCAAGTACCGGCTCATCGCGCACCGCCGCGTGCACGGGCCGGCGCGCGGGGCCCACACGTGCAGCGTGTGCGCGAAGGCCTTCACCACCGCCAGCAACATGCACAGGCACATGGTGAGCCACACCGGCCTGAAGCCGTTCAAATGTGAAATGTGCGGCAAATGCTTTAAGCACGCGAGCGAGAAACGTGTTCACATTACTTACGTGCATCTCAAGAAACCCTGGCCCAAGCGTGCCCGGGGGAAGAGGAAGGCTGATAATACACAGAATCAGGTACCACAGCCAGTCCCAATGCCTCCTACAAACATCGTGCCTCTGTGGCCGGCCTGCCCGGACCCTAAGATAGACTTGCTGATGGAAGACAAGCCGCTGTACTATAACATCAAAATATAG
Protein Sequence: MLVNSETVSSTIGAAVIKPGVFKLANGDFRMPNRVCWECGVKLAAAASFRAKALRSEELLKELLHPEVFTDPDVSSIDREANNLTSSLKPKIFEANHVDYHFIYTEPIHTNILQDIHEINLPDIEIESEEPISAYNDSSNDETVFIKSKKVKKKKSTHIVGEVERVEEVGKVKKDDKRFKPANEVLNDDIFNITDLTHEQQMYEIQKRQNSSNYKNSEYKCTACFKGFLDEDAYKGHMNRHTNQCGTYECQICKIRFKKLQALRNHATSHMQKFSCKRCPYVTSRRHAAKLHEEYHNGTRYECPHCLENFDKISTYMSHVRIKHPSDIVCELCGYSFVSAKGLGLHKKLKHRFDDHQVPADGPCCPKCDVQFISTEALERHIQLSGRHSEESETKRRRSRRPRELHDINGTRQKDTEQKKKRNSCNTEGPISCEQCEMQLPDPLSYYRHFRRMHPDKNRTKYPSMKSKSMCEVCGKMFQSLALLQDHSWTHTDSKHFKCSVCDKRFQRKYRLIAHRRVHGPARGAHTCSVCAKAFTTASNMHRHMVSHTGLKPFKCEMCGKCFKHASEKRVHITYVHLKKPWPKRARGKRKADNTQNQVPQPVPMPPTNIVPLWPACPDPKIDLLMEDKPLYYNIKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -