Dcae002503.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- -
- Assembly
- GCA_947459985.1
- Location
- OX381617.1:24808305-24818485[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.019 1.6 9.9 1.9 2 23 34 55 33 55 0.91 2 16 0.47 39 5.5 2.5 1 19 64 82 64 87 0.94 3 16 6.5e-05 0.0054 17.7 2.5 1 23 93 116 93 116 0.95 4 16 0.0018 0.15 13.1 4.3 1 23 118 140 118 140 0.97 5 16 4.4 3.6e+02 2.5 0.7 1 7 149 155 149 157 0.95 6 16 0.097 7.9 7.7 0.0 1 23 176 198 176 198 0.96 7 16 0.13 11 7.3 0.3 3 23 227 248 226 248 0.88 8 16 1.4 1.2e+02 4.0 6.2 1 19 255 273 255 277 0.89 9 16 1.8e-05 0.0015 19.4 0.2 1 23 283 306 283 306 0.92 10 16 0.00013 0.01 16.7 1.1 1 23 315 338 315 338 0.98 11 16 0.019 1.6 9.9 0.2 2 23 344 367 343 367 0.92 12 16 0.12 9.7 7.4 2.2 3 23 375 395 375 395 0.97 13 16 0.047 3.8 8.7 0.4 1 23 400 422 400 422 0.90 14 16 0.00025 0.021 15.8 2.1 1 23 428 450 428 450 0.97 15 16 2.1e-05 0.0017 19.2 3.8 1 23 456 478 456 478 0.98 16 16 0.039 3.2 8.9 9.2 1 23 484 507 484 507 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCACCGACACACTCGGACGCAGCAGGCTGGCTGGAGCAGGTCGAAAGCGTGCTAGGCCGCAAGCTGACGTCTATAGAGGTGGTTGGCGGTATATACTGCAACATTTGTCACTCAACATTTAGTAACAAGAAGGAATATGACACTCATTATGTAGACCATAGTATTGGCAATGCTGACATAGGGTACACTTGTGTCGTGTGCCGCAAGGAATTTACTGGCTACCCAAGCTTCCGTAACCATTGCTACTTGGCTCATGTTGCTAAAAACAAGCACAAATGTCCACATTGCTCCAAATCATTTTCAAAACAATCAATTTTGAACAATCATATTGATATTGCTCACAAATTCAAATGTGCATCATGCAAGAAACAGTTTTCATCTAAAAAGGAACTGCACACACATAAAATCATTCACAAAAACGACAAATACAAGCCGCCGTACCAATGCCACGAGTGCGGGGATGCGATCGAAAGTATCGATATGTGCGAGTATCACATCGATGAACACTGCAGCAGCCTGTACCCCTGTCCTGTCTGCAACGAGATGGCTAACAACAAGCTCGAAGCTGCTAAACACCTAACCAAACACTTCGGCGAAGTACTTACTGACGAAGACATCTCTGCCCCAAAGATTAGTGAAGACTGCTCTATCGATATACTTGGAGGAGTCCTCTGTAACTACTGCGATGAATTATTCAAGAACAGACCGGAGTTTGACACTCACTTTGCACTAGAACATGGGGACAAAGAGTTAGTATATTCATGCAACATTTGTGGGAAGCAGTATGGCAAATATCATCTGTTTAGCAACCATTGCTACTATCATATCGCCAAAGACAGATTTGAATGCACAGATTGTGATAAGACGTTCCCGCGTCTCTCGCTCCTTGTGCTCCACACAGAGGCATTCCATTCGGCCGGCTTCGTGGTGAAGCCGTTCAGATGCGGCGAGTGCGGGTACGGGTTCAAGTCTGCACGGCGACTGTGCGAGCACACCCGCGTGGCACACGATACCAGTGCCATGAGGTGCCGGCAGGAAGGATGTGACAGGACATTCGAGGCTCTCAAAGATCTGGTTCTTCATCAAAGAGAGCACAGGACAAATCGTGATAACTGGTGCCGGCAGTGTGGGCTGCAGTTCACCACGCTGTCCTCCTGCGAGCGGCACCTCGACGTGCACCGCAAGAAGCACTTCGCCTGTCCTGTCTGCAACAGAGTCTACCACGAAAAATATCTTATCCTCAAACATATTCCCACACACTTCGAGTCAGTCCTGCACATCTGCAAAGTTTGCGGCAAAGTATTCAACCTCAGGAGCCGGCTGGTCCAACACTCCAAGACCCATTCAGATCTAAGAATACACCAATGCACCTACTGCAACAAAGGCTTTATGAAAGCTTCCCACTTGGAACAACATCTCAATATACACACGGGCTCTAGACCATTCAAGTGTACATTTTGCTCCAAAACATTCGCCAGTCATCCGAATTGCCACAAACATATGCGCCGTGTGCACAATATCGACAAGAAAGAAAATAAAAACGTTAAGAATAAGAATAAACCAACCATTAAAATGATGACTTCAAGTGAAGTGCCTCCTGTTACTAAGCTAGATAATAGCGATGGTAAATCGAAAATCGAATCGGGGATCGATTCAACGAGTTCCGAAATGTCGTTAGAAACATACAGTTTCGCCGAATCGGATGACAGTACGATGGACAGCATTGATCCAACAGTAATTGTGAAAGATTGGTGTATTTTGAATGAAAACTCTCTAATAGACAATAATCTACAATATACGGATATGCTGCCAGTAAACAGCGCTACATTTGATTCTGAAGTACCCCTTCACAACGCAATAGTGGCCGAGAGTCAGTCGTCTGCCGTACTGCAAGAGTACGGGCCGGAGTTCAACGTGGGCGGGCACGTAAGCGACGTGTTCAGCGGCGCCTGCATCGACCTCGACGACCACTACCTGCCGCACATCGACCCACTGCTCACCATAAAGCCGCAGCAGACCCACAGCATGCATGAACATACCATCAGACACCAGTATGATTACACTCAGGCTGACCCCAACACCCAGAACAACTGGGAACCTATAATCACCAAGGTATACCACGCATACGATGACACCGACGTCAACAGACTCTCGATATTAAATACGGATATATTTTGA
- Protein Sequence
- MASPTHSDAAGWLEQVESVLGRKLTSIEVVGGIYCNICHSTFSNKKEYDTHYVDHSIGNADIGYTCVVCRKEFTGYPSFRNHCYLAHVAKNKHKCPHCSKSFSKQSILNNHIDIAHKFKCASCKKQFSSKKELHTHKIIHKNDKYKPPYQCHECGDAIESIDMCEYHIDEHCSSLYPCPVCNEMANNKLEAAKHLTKHFGEVLTDEDISAPKISEDCSIDILGGVLCNYCDELFKNRPEFDTHFALEHGDKELVYSCNICGKQYGKYHLFSNHCYYHIAKDRFECTDCDKTFPRLSLLVLHTEAFHSAGFVVKPFRCGECGYGFKSARRLCEHTRVAHDTSAMRCRQEGCDRTFEALKDLVLHQREHRTNRDNWCRQCGLQFTTLSSCERHLDVHRKKHFACPVCNRVYHEKYLILKHIPTHFESVLHICKVCGKVFNLRSRLVQHSKTHSDLRIHQCTYCNKGFMKASHLEQHLNIHTGSRPFKCTFCSKTFASHPNCHKHMRRVHNIDKKENKNVKNKNKPTIKMMTSSEVPPVTKLDNSDGKSKIESGIDSTSSEMSLETYSFAESDDSTMDSIDPTVIVKDWCILNENSLIDNNLQYTDMLPVNSATFDSEVPLHNAIVAESQSSAVLQEYGPEFNVGGHVSDVFSGACIDLDDHYLPHIDPLLTIKPQQTHSMHEHTIRHQYDYTQADPNTQNNWEPIITKVYHAYDDTDVNRLSILNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -