Dcae010359.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- Zfa
- Assembly
- GCA_947459985.1
- Location
- OX381629.1:2894830-2908552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0046 0.37 11.8 2.1 1 23 246 268 246 268 0.98 2 11 0.0018 0.14 13.2 0.4 1 23 275 297 275 297 0.98 3 11 5.5 4.5e+02 2.2 1.4 1 9 301 309 301 324 0.75 4 11 4.2e-05 0.0034 18.3 7.2 1 23 330 353 330 353 0.94 5 11 0.00013 0.011 16.7 0.7 2 23 360 382 359 382 0.95 6 11 5.3e-05 0.0044 17.9 0.5 1 23 395 417 395 417 0.96 7 11 0.0013 0.11 13.5 0.2 1 22 423 444 423 448 0.93 8 11 0.00023 0.019 15.9 1.1 2 23 457 479 456 479 0.95 9 11 5.8e-05 0.0047 17.8 0.2 1 23 485 508 485 508 0.97 10 11 1.3e-05 0.0011 19.9 0.1 1 23 517 539 517 539 0.98 11 11 0.012 0.97 10.5 0.3 1 19 545 563 545 568 0.90
Sequence Information
- Coding Sequence
- ATGGAGGAAGAACCTGAATTGTCGAAGAACTATTGTTTTGGCTGTTTGTGTGTTAATAAAGAAAAACGCGTACAAAATTATGCATTTCAATGCGGTCCTCTCAAGGAAATATTTCAGATGGAGTGCATATTCTTATGTTATTTATGCAAAAGAATGGCTCAGCACACTGAAAGGTTTATTCAAAATGTACAAAGTAATCAAATATTCCTTGAAAACTTTAGTAATGTGATGGACGAAACATTAAAATCATTGAGATCGCAAGCTCAGCCTCTAGTCAACCTGACCCAAGTGCCATTTGATGTGATAGAACTGTCAGACAAGGACGGCCATAGTTTCGAGGAATCCTTTTCCGTGATATGCAGCAGAAGTAGGGATATGGATAGTCAGGTCAAGGTTGAGATGAAGGAGGAGGAATATATGGATCATCTTGAAGGAGAGTTTATTAATGGTGGAGACGAATTTCCAGAATCATACGTAAAAGAAGAAGATACTTTCCCTTTGAAAGCTTTGTTGAAAGAAGAATTGGAACTAGAACACATTGACAGTATAGATCTCTTGAGTCTTAGTGCAACACTCAAAAAGAACAAAGTAAAGAATAAAGATAACATTAAAAGGGAAGATTTAAAAAGAATAAAAAAAGACACACCCAAAGTAAAAATGCTATACATAACCCGGAAGCAGTGTATTGACGAACGGACAAGAATGTTGCAAGATCCAAAATATCTAGGATGTGCGTTCAGATGTCAAAACTGCATCAAAGGGTTTAGTTTCAAGGGCAGCTTTGACAGACATATGGAGAAACATAATCAGTGTATGGGTGACTATGAATGTGATATATGTAAACAGAGAATGGACTCCGAAGATAAGTTAATTAGCCACATGAGGTATCATTTAATCCGTTACAAATGTGGTGAATGTGGGTTGACGCGGAACTGTCGTGTTACAATCCGAGATCACTACCAGGCGTACCACTGCCAGGGCCTCTATCACATGTGTCCACATTGCACCAAGACTTTCAAACGACAAATGTCTCTTCGCAAACACATTCACTATGCGCATACGCATAAAGAACGCGTGCAATGCGCATACTGTCACAAATCATACGCCAACAAAGGCGTACTCAGGTCGCATATGGTTATGCAGCATTCCAAAGAGGTGTCTGCAGGGGAAATATTGAAGAAGCATGTATGCCAGGAGTGTGGGATGGCGTTCAAGGCACCTTCTCAACTCAAGAACCACAGCATAAAGCACTCTGACAGTAGGAACTACTATTGTGTAGAATGTGATAAGAGTTTCAAATCAGACGCCATATTGAAAAACCATTTAAAAACTGCAGCTATCCACGTTAATTACATAGAATTACCATTGCCATGCCTACATTGTGACAAACGCTTCGCTATACGTCGAGATCTAGAGAGACATACAAATAGAGTACACCTCAACTTCAAACCATTCACGTGTGATAGATGTGAAAAGGCTTACGTGAACTCCTGGGCACTGAAGGAGCACCAGCGGTTAATCCACGAAGGCTACAAGAGACCTCTACAGTATCCTTGTCCTATGTGTGATAAAGTTTTCGATCGTAACCAGATCCTGAAAGGTCATATACGAACCCACACCGGTGAACGCCCATTCCAGTGCAGCAAGTGTCCTGCCCAGTTCAGTCAAGCCAACGTATTACGGACCCACGACAGATTAATACACCTCAAACAAACGCGAGATGGACGGCCCAAGCTCAAATAG
- Protein Sequence
- MEEEPELSKNYCFGCLCVNKEKRVQNYAFQCGPLKEIFQMECIFLCYLCKRMAQHTERFIQNVQSNQIFLENFSNVMDETLKSLRSQAQPLVNLTQVPFDVIELSDKDGHSFEESFSVICSRSRDMDSQVKVEMKEEEYMDHLEGEFINGGDEFPESYVKEEDTFPLKALLKEELELEHIDSIDLLSLSATLKKNKVKNKDNIKREDLKRIKKDTPKVKMLYITRKQCIDERTRMLQDPKYLGCAFRCQNCIKGFSFKGSFDRHMEKHNQCMGDYECDICKQRMDSEDKLISHMRYHLIRYKCGECGLTRNCRVTIRDHYQAYHCQGLYHMCPHCTKTFKRQMSLRKHIHYAHTHKERVQCAYCHKSYANKGVLRSHMVMQHSKEVSAGEILKKHVCQECGMAFKAPSQLKNHSIKHSDSRNYYCVECDKSFKSDAILKNHLKTAAIHVNYIELPLPCLHCDKRFAIRRDLERHTNRVHLNFKPFTCDRCEKAYVNSWALKEHQRLIHEGYKRPLQYPCPMCDKVFDRNQILKGHIRTHTGERPFQCSKCPAQFSQANVLRTHDRLIHLKQTRDGRPKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260363; iTF_01539020;
- 90% Identity
- -
- 80% Identity
- -