Dcae012838.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- -
- Assembly
- GCA_947459985.1
- Location
- OX381630.1:2464998-2499750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0026 0.21 12.6 0.1 1 23 410 432 410 432 0.96 2 15 0.0033 0.27 12.3 2.8 1 23 438 460 438 460 0.98 3 15 0.0033 0.27 12.3 2.8 1 23 478 500 478 500 0.98 4 15 0.0033 0.27 12.3 2.8 1 23 518 540 518 540 0.98 5 15 0.0033 0.27 12.3 2.8 1 23 558 580 558 580 0.98 6 15 0.0033 0.27 12.3 2.8 1 23 598 620 598 620 0.98 7 15 0.0033 0.27 12.3 2.8 1 23 638 660 638 660 0.98 8 15 3.3e-05 0.0027 18.6 2.6 1 23 667 689 667 689 0.99 9 15 6.2e-06 0.00051 20.9 0.4 1 23 695 717 695 717 0.93 10 15 5.7e-07 4.7e-05 24.1 0.1 1 23 723 745 723 745 0.98 11 15 5.4e-06 0.00044 21.1 1.9 1 23 751 774 751 774 0.96 12 15 0.0055 0.45 11.6 3.5 1 22 780 801 780 801 0.94 13 15 9.8e-05 0.0081 17.1 4.0 2 23 831 852 830 852 0.97 14 15 2e-05 0.0017 19.3 1.0 1 23 858 880 858 880 0.96 15 15 0.03 2.4 9.3 0.1 1 23 886 910 886 910 0.93
Sequence Information
- Coding Sequence
- ATGAAGTCGGAATTACTACGACAATTCAAACTGTCCTTATCAAGTAATAATATAGATTATGAAAACTACGAGAAATATGATCGAAATTCACCATCAAAGCCAAAAATGGCTGTGGGGAAGAAGCTGGTGGTGCCAGCATCGAAGTTACAACCAATACCACCGGATTATTTGCTCAGAGTGGGGAAATTGGGATCTTTTGCCAAGCCTAATATGATATTACCACAGATTAAGCCCAGCACACCATCAACTGTAATGGTAACAGTTGGATCATCGATTCTAACTCAATCACTTAAAACTTTAACAAACAAGCCAACAGAGGTACAGACTTCAGAATCAAATTCAATCATAACATCTATCACAAACACTATAAAAGATGACATTGATGATATGGTAGCATCGGCAAGTGAAAAAAACTCTGTTATGAGCTTCAATGTGAACTCATTGCCAAAGGATTTCTTTTCTGGAGCTATGTTGACGAAAATTGATGATAATAACGATGAAGTCATTCAAGTGAAGGGTGAAGGGAACAATGGTGATCATTCTATGGAGATTGATGAAGATTGTTTGTCCAGTGTGCCAGTTACTACCGTAGATGGAGAGCACTTAATGCTACAAGTGGAAGAAATGCAGTCGAAATCCCGAAATACTCCGGAAGTTAACGAATACTTGAACGTAGAGGCACCACGGCTAGATGGCGCTGACGGTGAAGTGACCGACGCGCAGAAGTACATACTGAGCAAGCTGCAGATATTGAACGAGGGTGAAGATGAGGACGATGATGAAGAAGGACATGCAATAGTTGTGGATGGTGAGAGTGGATCAATACTCAGAATGATGGCCGGCCAGAAGTTTATATACGAAGGTGGAGAAATCTCCCTGATGATGCCCGACGAAGACGAGCAGCCGGACGATGCTGATGATGATCATAACGATAACGGTGACAGTCAAGATTCCAACGACGAATCGCAGATAGAACTACAAGTTTCGGGCGACGAGGAAACCGCTAATGCTATTATAGCCGCCGCTCAAGAACAAGGTGGAGCATTCATTAAAGTGGAGTCGGGCGAGATGTTTCGCGTCAAGTCAGTTTCGAGCACGACGCAGGAATCGAGCGAGATGCAGATGCAGATCGTGGCGCAGGAGGGGAGCGCGTTCAAGTGCTTATTGTGCGAAAAGAATGCGGAGCACGCGCAGAAGCTGAAGCCCGGCGCGGGGCGCGCGGCCGAGCACCGCTGCGGCGCGTGCGGGAAGGGCTTCAGCAGCCGCGCGCTGCTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCGTGTGCCACAAGGCCTTCGCGTCCAAGTACACGCACCAGGCGCACCTGAAGACGCACGCGCAGCACGTGCTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCGTGTGCCACAAGGCCTTCGCGTCCAAGTACACGCACCAGGCGCACCTGAAGACGCACGCGCAGCACGTGCTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCGTGTGCCACAAGGCCTTCGCGTCCAAGTACACGCACCAGGCGCACCTGAAGACGCACGCGCAGCACGTGCTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCGTGTGCCACAAGGCCTTCGCGTCCAAGTACACGCACCAGGCGCACCTGAAGACGCACGCGCAGCACGTGCTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCGTGTGCCACAAGGCCTTCGCGTCCAAGTACACGCACCAGGCGCACCTGAAGACGCACGCGCAGCACGTGCTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCGTGTGCCACAAGGCCTTCGCGTCCAAGTACACGCACCAGGCGCACCTGAAGACGCACGCGGTTCGCCCTCGTCCCTACAAATGCAGTCAGTGTGACAAATCTTTCCTTACACAACAGAATCTGAACCAGCATGAAAAGACGCATTCAGGAGTAAAAGATTTCGTCTGTAATATATGCAGCAAAGCGTTCAGTACACAACACAACCTCGAAGTTCACGGCGTGGTCCACTCCGGCAACAAGGCGTTCGTGTGTAGTGTGTGCGGCAAGGCCTTCGCGAGACGAGCCGAACTGAGAGACCACACGCGGATACACACAGGCGAGCGGCCGTTCTCGTGCGACATCTGCGGCGCTCGCTTCACGCAGCGCTCCAACCTGCACTCGCACCGCCGGGCCACCCATCTGGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGCGGTTCAAGCGGAGACGGTATGCTCGGGTTCATATACATACGAGGTGGAGGACGGGGAATGATTCAGTAGAGGCTAGAATGTTACTGGAGTACCACATAAAGGCGTCACACACCGGCGAAAGGCCGCTGAAGTGCGGGTACTGTCACTCTTCGTTCGTGTACCCTGAACATTACAAGAAACACATGAGAATACACAGTGGGGAACGACCCTATATCTGTGAGATCTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTGGCCTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTCTACGCGCACATGAACACCAGCGGACATTTAGCCGAATCCATAGTAGTCAATCAACCTAGAGTTATCAAAGTTACTGAAAACGTAGCGGTAACGCCATCAGAGGAGGATAACGACGCTGAATCGAAGTCTCATAAATATGACACGATATTTGATTCCAGTGAATTGGACTCCAATGTGAAATCTGATGATAACTTGGGGGATAGAGTTGATGGAACCATTTTAGAAGCAGTAGATGTAGCCGACCAGCTTAGTGACCAGGCGGAGATCGTAGCCAACGACGAGAACGGCGGGATGGTGCGCCTCATACAGATCAAGCTTCCGGACGGGAACAACGGATGGGTGGCCTTCAACCGCTGA
- Protein Sequence
- MKSELLRQFKLSLSSNNIDYENYEKYDRNSPSKPKMAVGKKLVVPASKLQPIPPDYLLRVGKLGSFAKPNMILPQIKPSTPSTVMVTVGSSILTQSLKTLTNKPTEVQTSESNSIITSITNTIKDDIDDMVASASEKNSVMSFNVNSLPKDFFSGAMLTKIDDNNDEVIQVKGEGNNGDHSMEIDEDCLSSVPVTTVDGEHLMLQVEEMQSKSRNTPEVNEYLNVEAPRLDGADGEVTDAQKYILSKLQILNEGEDEDDDEEGHAIVVDGESGSILRMMAGQKFIYEGGEISLMMPDEDEQPDDADDDHNDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSTTQESSEMQMQIVAQEGSAFKCLLCEKNAEHAQKLKPGAGRAAEHRCGACGKGFSSRALLGEHANVHSGARPYACAVCHKAFASKYTHQAHLKTHAQHVLGEHANVHSGARPYACAVCHKAFASKYTHQAHLKTHAQHVLGEHANVHSGARPYACAVCHKAFASKYTHQAHLKTHAQHVLGEHANVHSGARPYACAVCHKAFASKYTHQAHLKTHAQHVLGEHANVHSGARPYACAVCHKAFASKYTHQAHLKTHAQHVLGEHANVHSGARPYACAVCHKAFASKYTHQAHLKTHAVRPRPYKCSQCDKSFLTQQNLNQHEKTHSGVKDFVCNICSKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHTRIHTGERPFSCDICGARFTQRSNLHSHRRATHLDDKRYHCTQCPKRFKRRRYARVHIHTRWRTGNDSVEARMLLEYHIKASHTGERPLKCGYCHSSFVYPEHYKKHMRIHSGERPYICEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENVAVTPSEEDNDAESKSHKYDTIFDSSELDSNVKSDDNLGDRVDGTILEAVDVADQLSDQAEIVANDENGGMVRLIQIKLPDGNNGWVAFNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -