Dcae008428.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- -
- Assembly
- GCA_947459985.1
- Location
- OX381613.1:24671555-24678201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.6e-07 5.4e-05 23.9 1.5 1 23 24 46 24 46 0.97 2 16 0.29 24 6.2 2.6 1 23 67 89 67 89 0.89 3 16 0.0017 0.14 13.2 0.2 1 23 113 135 113 135 0.93 4 16 4 3.3e+02 2.6 0.8 5 23 143 162 140 162 0.93 5 16 5.8e-06 0.00048 21.0 0.8 1 23 246 268 246 268 0.98 6 16 4.3e-08 3.6e-06 27.7 0.2 1 23 274 296 274 296 0.98 7 16 1.8e-05 0.0014 19.5 0.1 1 23 302 324 302 324 0.98 8 16 1.6e-05 0.0013 19.5 1.2 1 23 330 352 330 352 0.98 9 16 4.2e-06 0.00035 21.4 0.3 1 23 358 380 358 380 0.96 10 16 0.00026 0.021 15.8 2.5 1 23 386 408 386 408 0.95 11 16 0.00022 0.018 16.0 3.5 1 23 414 436 414 436 0.97 12 16 0.00031 0.026 15.5 0.4 2 23 444 466 443 466 0.96 13 16 2e-05 0.0017 19.2 0.6 1 23 472 494 472 494 0.98 14 16 0.00036 0.029 15.3 3.9 1 23 499 522 499 522 0.96 15 16 8.8 7.2e+02 1.5 1.3 2 20 526 544 525 546 0.79 16 16 7.4e-05 0.0061 17.5 1.5 1 23 578 600 578 600 0.99
Sequence Information
- Coding Sequence
- ATGAGTGTAAGAATTTTGACAGATGGAAGCGAACAGGAATTGCTGGTGCATGTTGAAAGACTGAACATTCACAAGTGTGACAAGTGTCCAAAGGTCTTCCCAAACCAAAGTGACTTGAATAAACATGTGTTGTATCATGATGAATCATTTTTATCACATGCTCATAGTGCATATGTAGTTGTAGAAAGAGCCAAGCTATTTACATGTGAAAAATGTACTCAAGGCTTCGATACTAAAAGAGAGTTCATGTTTCATAAGCTGCAACATGTAATGAAAAATGTGAGAGACGAGAGGAAAGTGAAAAAATTCAAGATAGATACTGATATTTCCAAGCCCTTCAAGTGTCCAGATTGCGAATATAAATTCGTAGCTCAAAGCACTCTAGACGAACATTCTATACTTCACAAACCAATGCCCCACATCTGCAAGTGTGGCATTGGATACTTCAGGCAACAAGATTTAATTTTCCACATGAAATTGGTGCACGGTGGTGAAATGGACGCTACTTCTAAGAAGAAGAAAATGGCAACCAGTCCAAATAAGAATACAGTAATACCTGAACGAAAGCTAAATAATAGCAAGGGACCTAAATTGAAGGCCATTTTAACAAACAAGAAAAAACCTGCAAGTGGCAAGTGGAAAATCAAGGTGAAAGGTAAGGGTGGCCCAAGACCAAAACATGAGATAAAGGTACCACACCCAGATATAGTTATCAGAACAACTCCTGACGAAAGATTTGAGTGCCCTGATTGCAAGAAAACATTTGGTAGCAAGACTAATGTTTATGTACATTATCGTGTTCACAGTGGTGCTCGTCCATTCCCTTGCGACCAATGTGGCAAGTCCTTTACCCAGTCAGGAGCACTAACAAAACATATTGCAACACATGTAAACGAAAAGAACTACGTGTGCCAATATTGCCCCAAAGCTTTCAATACTCCAGAAAATAGGGCTCGCCATGAGATGATACACAGTGCAGTCAAGCAATATGAGTGTCCCTTCTGCAAGAAAGAATTTCACGATCCATCTGCAATGATACGTCACAAACGAATCCACACTGGAGACAAAAGGTACCGTTGCCCTTATTGTCCTAAAGCATTCACTGACGTCAGTGGCCTCTATAGACACAAGTTAGGCCACGAGAATAAGAAAGACTTCTCATGTGAGATTTGTAAAAAGAAGTTTTATACACGACACGATGTAAGAAAACACGTAGCAGCACACAATCAAGAGCGAAACTTCTGCTGTGACTATTGCAAACAATATTACAGCAGTAAAGCAAATTTAGCTATGCATATAAAGAGGCATATAAACGCAAAAAACCCGCTTAAATGTGAGCTCTGTGATAGAGTATTTTTAGTGAAGGATAATCTAAAAACACATATTTTGAGAATGCACGATAAAACGAGAGACTATGAGTGTGAGACATGCAACAGGCGGTTTTTCAACAATACTGAATTGAGAGCACATGTTTTAATACATAAAAACATTAAATTTGAATGCAATGACTGCTCTCTAAAGTTTAATCAAAAATTCAGTTTAGCACGCCACTATCTGAGCTGCCATTCAGGTATACAATGCGACAAGTGTTCACAGTATTTTTCATGTAACAAAGAAATAGAAGAACATAGGCTTAAGGAGAGCGAACTATGTGAAATATGTGAGAAGGAATTCTTTTGTAAGAATGTAAAAGATAAACATTTAAAAATACATTGTACTGATAAAAAACAGTATGAATGTAACGAGTGTGGGATGATATATAATCATAGGAAATCAATAATCAAGCATTTAAGGAGTCACATGATTAAGGGAAATTAA
- Protein Sequence
- MSVRILTDGSEQELLVHVERLNIHKCDKCPKVFPNQSDLNKHVLYHDESFLSHAHSAYVVVERAKLFTCEKCTQGFDTKREFMFHKLQHVMKNVRDERKVKKFKIDTDISKPFKCPDCEYKFVAQSTLDEHSILHKPMPHICKCGIGYFRQQDLIFHMKLVHGGEMDATSKKKKMATSPNKNTVIPERKLNNSKGPKLKAILTNKKKPASGKWKIKVKGKGGPRPKHEIKVPHPDIVIRTTPDERFECPDCKKTFGSKTNVYVHYRVHSGARPFPCDQCGKSFTQSGALTKHIATHVNEKNYVCQYCPKAFNTPENRARHEMIHSAVKQYECPFCKKEFHDPSAMIRHKRIHTGDKRYRCPYCPKAFTDVSGLYRHKLGHENKKDFSCEICKKKFYTRHDVRKHVAAHNQERNFCCDYCKQYYSSKANLAMHIKRHINAKNPLKCELCDRVFLVKDNLKTHILRMHDKTRDYECETCNRRFFNNTELRAHVLIHKNIKFECNDCSLKFNQKFSLARHYLSCHSGIQCDKCSQYFSCNKEIEEHRLKESELCEICEKEFFCKNVKDKHLKIHCTDKKQYECNECGMIYNHRKSIIKHLRSHMIKGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -