Doo024483.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411737.1:12135061-12161033[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.6 8e+02 1.9 0.1 1 23 232 255 232 255 0.87 2 10 0.54 65 5.3 1.1 1 23 287 310 287 310 0.96 3 10 0.011 1.4 10.6 2.5 1 23 353 376 353 376 0.95 4 10 4.1e-06 0.0005 21.4 1.6 1 23 380 402 380 402 0.97 5 10 0.29 36 6.2 0.3 2 23 410 430 410 430 0.93 6 10 0.035 4.3 9.1 2.4 1 21 436 456 436 461 0.94 7 10 1.7e-05 0.0021 19.5 0.8 1 23 469 492 469 492 0.96 8 10 3e-05 0.0036 18.7 2.4 1 23 498 521 498 521 0.98 9 10 3.3e-05 0.004 18.6 0.3 3 23 533 553 532 553 0.96 10 10 4e-05 0.0049 18.3 2.0 2 23 560 582 559 582 0.96
Sequence Information
- Coding Sequence
- ATGGACGATTGTCCAGAAGTAGAGTTAAAGAAGCTGTGTTGTACGTGTTTAAGTCGAGATAGAAAGTTGTTCCAACTGTGCAGACTACCTGACGGCGTTAATAATTTATATTTGTTGCTATCCTTTGATTCTGAAGCTTACAGGGAGGGATTCTATAAGGACACTGCTAGTTTATATATATGCTGGGAGTGTAGAGCTGTCATGTGTAGAATCACACGGTTCAGGAAACAGGCCTGCGCGGCACAGAGAGAACTGACGAGTATAGCTGATGGGAGAACTCATGTTCAAATTACCAGCCTGTCCTGCCTAACTACCCACCACAGAACTATCTACCAAAGAGTAATCTCAGAATCAAACACTACTTCAACAGACAATTTCATAGACTGTGGTTTAACTACAGACATAAAAAGCGAAAGTGAAGAGGACATACCTCTATCAGAACTCCACAGCAACTGGGTTTCTGACAACGAGGCTGAAGTAGTCATTCCAACCATAGACTGTAAAGAGGAACTGTCAATTTCAAAAGATACCACAGATTACAAAGAGGACTTATTGTACAAGTTAAAAAAGAAGAGAAAGAAAATTAAGAATGGGAAGAAGAAGAGTTATTTTTCTACTGTTTTGATAAATGACAGTGAGTTGGAAGAAATTAGGAATAATAATAGAATGGCAGTGGATTTCGTGGATGCAGAATATAAATGTGATAGCTGTATAGAAGGGTTTGGAAGTCAAGAGGAATTGGATGGACATAATTCGTCTGTACATGTAGACAAAGCAGACCATCTCCAATGTGACATATGCCTGGTCTACACTCCCATAGCAACATTCCATGACCATAGAGAGGAACATTACCATAGACACGTTTGTCAATTCTGTGTGTATACGGCCTATAATATAAGTGATATGTTGACACATTTGAGACGTGAACATGCTATGAAGAATTTAGTTTTACCTGGTAAGAAGAAAAAGACTCGTCACAAAACTGCAGGAGATTTAAACCCCAGTTCGCAACCTCGACGAAAGCCCTCCATCTTGGACAAGCGAACACCTTATGGATACTTGTGTACTGAATGTAATAAATATTTTGACAACAAGAATAAAAAATGGAAGCACGTACAACGTCAACACAGAGAAGGTTACAAATGTGCTACGTGCGGCAAGAGGTTCGCTTTCAAGAACAACCTAACGAGGCACGAACAGCTCCACCAAGGCCCGCCTCCCCGCGAAGAATGTCCCGTCTGTCACAAGATGATCCGCACAGACCTCGTCAAAGTTCACGCGCGCATACACGCGGACAGGCAGCGGTACACCTGCGCGGCGTGTGCCAAGTGTTTCGTGAGCCGCGCGTCCTATGAACACCATCTGAAGTATACTCAAGCACACGCACAGACCGACATACTCAAATATAAGTGCACGATGTGTGACAAAGGTTACCGGTCACGTGGCGAGTTGCGCGATCACGTTAATTATCAACATATGGGGAAGACCCAACATAAGTGCCCGGTTTGTGGGAAGGCCTTAGCAACTCGTCGCTGTGTGACTAGACACATGCGGCGCGCGCACGACGGCGTCAAGGAAAGTGCTCGAGATAAGATATGTCAACAGTGTGGCAAGGCCTTTAGGGACAAGAAAGGCCTCCGCGAGCATGAGCTTATCCACACAGGAGAGCGACCACTCTCTTGCGAGATCTGCGGCTGTACGTTTAGACAGAGCGCGTCTCTGTACACGCACAGGAAGCGAGTTCACAAGGTTTACAATAGCGTTAAGAAAGTAACGCTGCTAGAATAA
- Protein Sequence
- MDDCPEVELKKLCCTCLSRDRKLFQLCRLPDGVNNLYLLLSFDSEAYREGFYKDTASLYICWECRAVMCRITRFRKQACAAQRELTSIADGRTHVQITSLSCLTTHHRTIYQRVISESNTTSTDNFIDCGLTTDIKSESEEDIPLSELHSNWVSDNEAEVVIPTIDCKEELSISKDTTDYKEDLLYKLKKKRKKIKNGKKKSYFSTVLINDSELEEIRNNNRMAVDFVDAEYKCDSCIEGFGSQEELDGHNSSVHVDKADHLQCDICLVYTPIATFHDHREEHYHRHVCQFCVYTAYNISDMLTHLRREHAMKNLVLPGKKKKTRHKTAGDLNPSSQPRRKPSILDKRTPYGYLCTECNKYFDNKNKKWKHVQRQHREGYKCATCGKRFAFKNNLTRHEQLHQGPPPREECPVCHKMIRTDLVKVHARIHADRQRYTCAACAKCFVSRASYEHHLKYTQAHAQTDILKYKCTMCDKGYRSRGELRDHVNYQHMGKTQHKCPVCGKALATRRCVTRHMRRAHDGVKESARDKICQQCGKAFRDKKGLREHELIHTGERPLSCEICGCTFRQSASLYTHRKRVHKVYNSVKKVTLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119731;
- 90% Identity
- iTF_00124660;
- 80% Identity
- -