Basic Information

Insect: Dicycla oo
Gene Symbol: salm
Assembly: GCA_948252095.1
Location: OX411712.1:20328763-20352630[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.29 35 6.2 1.9 1 21 49 69 49 70 0.94

2 8 4e-06 0.00049 21.5 0.9 1 23 370 392 370 392 0.98

3 8 8e-06 0.00098 20.5 2.1 1 23 398 420 398 420 0.98

4 8 0.006 0.72 11.5 2.2 2 23 676 697 675 697 0.97

5 8 0.024 2.9 9.6 1.6 1 14 703 716 703 717 0.94

6 8 0.64 78 5.1 0.0 10 23 744 757 742 757 0.93

7 8 3.6e-06 0.00044 21.6 1.7 3 23 838 858 836 858 0.96

8 8 4.3e-07 5.3e-05 24.5 0.5 1 23 864 886 864 886 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.29	35	6.2	1.9	1	21	49	69	49	70	0.94
2	8	4e-06	0.00049	21.5	0.9	1	23	370	392	370	392	0.98
3	8	8e-06	0.00098	20.5	2.1	1	23	398	420	398	420	0.98
4	8	0.006	0.72	11.5	2.2	2	23	676	697	675	697	0.97
5	8	0.024	2.9	9.6	1.6	1	14	703	716	703	717	0.94
6	8	0.64	78	5.1	0.0	10	23	744	757	742	757	0.93
7	8	3.6e-06	0.00044	21.6	1.7	3	23	838	858	836	858	0.96
8	8	4.3e-07	5.3e-05	24.5	0.5	1	23	864	886	864	886	0.98

Sequence Information

Coding Sequence: ATGATTCAGTTAGCGACGATAAAATTTGGCATACATGAGAAAGTGAGCACTAAAGTTCGTCACCAGCGGGGCGAAAGTTCGGGATCGTGTTCCGAAGATGATATCAACAATGTGTCTGACGAAACGAGAGACCGGCCTGAAGCGCACATGTGTCCGCGCTGTCAGGAACAGTTCGAGAACCTGCACGAGTTCCTGTACCACAAGCGACTGTGCGATGAGAAAGCGTTGCAAATGGGCGAGGAGAGAATGCACTCCGATCCAGAGGAAATGGTCGTTTCAGGCGACGAAGAAATGGATGGACCTAACAAACGATTAGAACAAGTCCGACGGCATCGACAAGATGCGGAGAATAATAACAGCCTCGAAGATGGCGAGGCAGAAGTGCCTGAAGCCGACGTGCCACCCGTCGGCCTGCCCTTCCCGGTGGCCGGCCACGTCACGCTCGAAGCTTTACAAAATACTAAAGTTGCCGTAGCGCAATTCGCCGCGACTACAATGGCAAACAACGCAGATAATGAAGCGGCGTTACATGAACTAGCCGTGCTACAAAGCACATTATTTACGCTACAACACCAACAAGTGTTTCAGCTACAATTAATACGCCAATTACAAAACCAGTTGTCATTAACGCGACGGAAAGATGACCAGCTCCCGAGCCCGCCGCCGAGTGAACCAGAGCCGGTGCCGGTACCTCCCGCTCGATCGCCGTCGCCGCCGCCTCGTCCGCCACGGGAGCCTACTCCTGTCGCACCCCCTCCTCCCACTAGTCAAAGCTTACCGTCAACCCATTCGCATCTCACACCTAAGACGGAACCTATCTCCGTTCCTAAACTCCCGACCTCATCTCCACCGGTGATGTCCCATCCACCGTACAGCTCCATTTCCTCATCGCTAGCGTCTACAATAATCACAAACAACGACCCGCCACCGTCTCTCAACGAACCAAACACACTTGAAATGCTACAAAGGAGAGCACAAGAAGTACTAGACAATGCGTCACAAGGCCTACTAGCGAATAATCTTGCCGATGAACTTGCTTTCCGAAAATCTGGGAAAATGTCACCCTATGATGGAAAATCAGGAGGAAGAAACGAACCGTTTTTCAAGCATCGCTGCCGCTACTGCGGAAAAGTGTTTGGAAGTGATTCTGCGCTGCAAATCCACATTCGATCGCACACAGGTGAAAGACCTTTTAAATGTAATGTATGTGGATCACGATTTACAACCAAAGGGAATCTCAAAGTACATTTCCAAAGACACACAGCAAAGTTTCCGCATGTCAAGATGAATCCCAATCCAGTACCAGAGCATTTGGATAAATACCACCCTCCTCTGTTAGCACAGTTGTCGCCGGGGCCAATTCCTGGCATGCCACCACATCCACTACAATTCCCTCCGGGTGCACCAGCTCCTTTTCCGCCAAGCTTGCCATTGTACAGACCCCCACACCACGACTTATTACCGCCTCGTCCGCTCGGAGACAAACCTCTACCGCCTCACCCACTGTTTGCAATGCGAGAGGAACAAGACGCTCCGGCTGATCTCAGTAAACCATCCGCGCCGAGCCCTTCTCGATCAGCACCCGAGGTTAAGTCTGAACCACAAGACGATGATTGTCATCGAGATTCCAGTTTTGAAGACGTTGACCGCGTATCTCCTAAGCGAGAACTTGATGAAAATGATGGCACACAGGATCCAGAACAAGACAGATATCCTTCAACGTCGCCCTACGATGATTGCAGCATGGACTCAAAATATAGCAATGAAGAACAAATTGGCAGAGAGAGTCCTCATGTGAAGCCCGATCCAGACCAACCGGAAAATCTCTCAAGTTCGGACAGCGGGCGCAGCGCGCGGGCGTCGCCTCCGTCGCCCACCATGTCGTCGCTGTCGACGCCGCCGCGGCTGCCGCTGCACTCGCCGCTGCCGTCGCCGCCCACGCCTATCGCCGCGCTGGGCGCGCTCGGAGGATCGCCCTTCAGCCCGCTCGGACTCGCGTTCCCTCCCGCAGTGCGCGGCAACACGACCTGTAACCTCTGCTACAAGACGTTCGCCTGCAACTCCGCTCTGGAGATACATTACCGGAGCCACACCAAGGAGCGACCGTTTAAGTGCACCGTCTGCGACCGCGGATTCTCTACAAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCGCGCGCGCACCCCGCCCCCCGCACGCCACTGCTTTGGACCTGTGGAACGCCTTCGTTTACCCGGGCAACATGAAGCAACACATGCTAACGCACAAGATCCGTGACGTGCCACCCGGGTTTGACAAGAGCTCGAGTGGAGCCGATGATGGCCGAGACCCGAGCCCCGACCGTCGCTCGTCGCCCGACAAACTCGACCTCAAGCGCTCGCCGCCTGCGCATCCCCCGCCACAAATGACGCACCCCCCACCTATCGATATGCCGCCAATGCCCAAACGACCCAGTGTACCCAGTGCGCCGTCACACCCCCCACCGCCGACCTCCTCCAAGCATCTGTGCGGAGTATGCCGCAAGAACTTCTCGTCGTCGTCTGCGCTTCAGATCCACATGCGCACGCACACCGGGGACAAACCCTTCCGATGCGCTGTGTGCCAGAAGGCCTTCACTACGAAGGGTAACCTCAAGGTGCACATGGGCACTCACATGTGGAGCGGCGGCGCGTCCCGGCGCGGGCGGCGCATGTCGCTGGAGCTGCCCCCCCGGCCGCTGCACGAGCCGCACGACCTGCTGCGCCGCCCCGACCTCTTCTACCCGTACCTGCCCGCGCCCTTCCTGAACGGCATGCAGCAGAAGCTGAATGAAATATCAGTGATACAGCAGAGCGCGGGCCAGAACGGTGTAGCCGGAAAATTCCCAGGACTTCTCGGCTTTGGAGCATTCGGGGGCGCGAGGCCAGGCGCTGCATCACCACTGGAGCGACCGCCTTCACTAGAGGGCGGTGACGAGAGGCAAGCAGCCATGCGCGAGCTGGCCGAGCGCGGCCGCGAGCTGGCTGAGCGCAGCCGACAGATGCGCGAGGACAACGAGTACCGCTCGCAGCCCCCCCACGGCACGCACGCGCCCTCGGCAGCGCAGGGCTCGCCGCCCGCGCCGCACCACCCGCACCCGCTGGCGCCGCTGCCGCCGCCCGCGCGCACCGAGGGGCTCACCGTGTAG
Protein Sequence: MIQLATIKFGIHEKVSTKVRHQRGESSGSCSEDDINNVSDETRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQLPSPPPSEPEPVPVPPARSPSPPPRPPREPTPVAPPPPTSQSLPSTHSHLTPKTEPISVPKLPTSSPPVMSHPPYSSISSSLASTIITNNDPPPSLNEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDAPADLSKPSAPSPSRSAPEVKSEPQDDDCHRDSSFEDVDRVSPKRELDENDGTQDPEQDRYPSTSPYDDCSMDSKYSNEEQIGRESPHVKPDPDQPENLSSSDSGRSARASPPSPTMSSLSTPPRLPLHSPLPSPPTPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDVPPGFDKSSSGADDGRDPSPDRRSSPDKLDLKRSPPAHPPPQMTHPPPIDMPPMPKRPSVPSAPSHPPPPTSSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGARPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMREDNEYRSQPPHGTHAPSAAQGSPPAPHHPHPLAPLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622287;
90% Identity: iTF_00042954;
80% Identity: -