Doo019069.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411734.1:8802784-8813299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0039 0.48 12.1 0.6 1 23 256 278 256 278 0.96 2 10 0.42 51 5.7 0.2 3 23 302 323 300 323 0.95 3 10 0.00016 0.019 16.5 1.6 2 23 345 366 344 366 0.95 4 10 0.083 10 7.9 1.6 2 23 371 392 370 392 0.96 5 10 0.00033 0.041 15.4 2.3 1 23 399 422 399 422 0.90 6 10 0.0023 0.27 12.8 1.6 1 23 428 451 428 451 0.95 7 10 0.00019 0.024 16.2 2.5 1 23 457 480 457 480 0.97 8 10 3e-05 0.0036 18.7 1.7 1 23 486 508 486 508 0.98 9 10 1.9e-06 0.00023 22.5 0.7 1 23 514 536 514 536 0.98 10 10 8e-05 0.0098 17.4 3.2 1 23 542 565 542 565 0.96
Sequence Information
- Coding Sequence
- ATGAGCACTACTAGCCGCCAGGGTCCTATCGTGGACCCTGGTTTATGTAGATGCTGTGGTGCTTTGAAGAAATGTCGCTTGTTGAACGTGGAATACGAATGGCTTGGTCAAAAAGAGGTGTATTCAGAGATGTTTGTCGATTGCTTTGGATTACTCCTCTCTCACTTGGACGGCAAGGAGTCTGTGCGAGTGATCTGCGCGACGTGTGTGGTTCGTCTGAGAGACGCGCGCGCCTTCCGACAACAAGTGCTGCTCTGTGAGGAGAAACTCTTACATGCTAACATACAAGTGCATGGAGAAGGACATCCCGAAAATGAACTGAAGAATGAAACAGTAGTGAAGGTGGAACTTGAGGAGTGTACTCCAGCACCTCTAGCTGATGCTGATAAGTCACCGGACGATGAGGCGGCGCAGGATGATCACATGGATGACGGTGTTGACCTAATGGATGATGATGAAGGAAGCCTGCTAAGCGAAACAACACCAAAACCAGTCAAGTCACCGAAGAAGAAGAAGAAGCTCAAAATGAAAGCAAAGAGTTCTAAACGCAAGAAAGGAGTTAACGGCCAGTGTGTTAAAAAGAAGATCAGCAAACGACGTACTAGGAGCCAGGAGTACCTTAATGTACAGGAAATAATAGAACCGGAGCTCCCGCCACAACAAATACCGAAAAAACACATTGATACAgaacagaaatgttttgccaacactatcgccgtagtcgagaactcattcgtatgtcccttcgactcttcatttagcgactactattgtatctactgccgtgaagtcttcacagacccaaacagactaagagaacatacattaacacacgatccaaccacattcaaagaccacatcacaaataaaaagttactcctagtcgatattttcaaaatcgactgtcgactatgctcaatcacaatcgataatatcgattcacttaaaagtcacctcactacgacccacggtaaagaaatatacgaattgtcaaatgagtttttgaaattccgtttaagtgtcaataatttgacatgcacagaatgcggaagtagttttagtttttttcatgctttaaagaaacatatggctgagcacttcggtacttgtatctgcgatgtttgtggcgcgcattattttgaagaaagaatgttagttttacaccagaaaactcatcaaaaagtcgaagaatccttcccttgtaaggactgcggaaaagtattcaagtccaaacacagtaggtatttacatgaagctaaattacacaaaaaagaacctgcttaccagtgttacaagtgtgacgaggtttttttttcatactctttacggtatcgccacatgatcgagtcgcatggcgaacagcgaatgtttccttgcgaacattgtgacagggcttatgatagccgaaaatctttaagagaacataataggagataccatttaaaaatattcaaacatcagtgtgacctgtgtgacaaaaggttttacctgccatctcgtttaaaagaacacatggcaacacatactggggaaagaaatttccggtgtgagttttgtgggaaaagctaccctaggttaaggggattaaaggtccatatgcagtctcatagcaatgagaaaaagttttgctgcgttatgtgtagtgcttcgtttacacaaaatataaatttgaagaatcatatgaaaaggcagcatcagagcttggacttagaggCTGCGTATCCTGAATAG
- Protein Sequence
- MSTTSRQGPIVDPGLCRCCGALKKCRLLNVEYEWLGQKEVYSEMFVDCFGLLLSHLDGKESVRVICATCVVRLRDARAFRQQVLLCEEKLLHANIQVHGEGHPENELKNETVVKVELEECTPAPLADADKSPDDEAAQDDHMDDGVDLMDDDEGSLLSETTPKPVKSPKKKKKLKMKAKSSKRKKGVNGQCVKKKISKRRTRSQEYLNVQEIIEPELPPQQIPKKHIDTEQKCFANTIAVVENSFVCPFDSSFSDYYCIYCREVFTDPNRLREHTLTHDPTTFKDHITNKKLLLVDIFKIDCRLCSITIDNIDSLKSHLTTTHGKEIYELSNEFLKFRLSVNNLTCTECGSSFSFFHALKKHMAEHFGTCICDVCGAHYFEERMLVLHQKTHQKVEESFPCKDCGKVFKSKHSRYLHEAKLHKKEPAYQCYKCDEVFFSYSLRYRHMIESHGEQRMFPCEHCDRAYDSRKSLREHNRRYHLKIFKHQCDLCDKRFYLPSRLKEHMATHTGERNFRCEFCGKSYPRLRGLKVHMQSHSNEKKFCCVMCSASFTQNINLKNHMKRQHQSLDLEAAYPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726763;
- 90% Identity
- iTF_01247473;
- 80% Identity
- -