Doo019070.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411734.1:8817118-8831680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0066 0.8 11.3 0.1 3 23 251 272 250 272 0.93 2 16 0.053 6.5 8.5 0.1 2 23 298 320 297 320 0.95 3 16 9.7e-05 0.012 17.1 1.6 1 23 342 364 342 364 0.98 4 16 0.0042 0.51 12.0 0.5 1 23 368 391 368 391 0.98 5 16 0.018 2.1 10.0 0.6 2 22 397 417 396 417 0.95 6 16 0.099 12 7.6 2.8 1 23 424 447 424 447 0.96 7 16 1.9 2.3e+02 3.6 0.2 3 23 480 501 478 501 0.87 8 16 1.7 2.1e+02 3.8 0.2 3 23 529 550 529 550 0.88 9 16 0.74 90 4.9 1.7 2 23 573 594 572 594 0.91 10 16 8.7e-07 0.00011 23.5 1.0 1 23 598 621 598 621 0.94 11 16 0.097 12 7.7 0.1 3 20 627 644 626 646 0.90 12 16 0.067 8.2 8.2 6.2 1 23 653 676 653 676 0.94 13 16 0.0058 0.71 11.5 1.0 1 23 685 708 685 708 0.95 14 16 0.00062 0.076 14.6 0.5 1 23 713 735 713 735 0.96 15 16 0.011 1.3 10.7 3.6 1 20 741 760 741 763 0.94 16 16 0.00019 0.023 16.2 3.5 1 23 769 792 769 792 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCTAAAACTACGGAATGGCGAGCCGGCCCAAGTGTTTGTCGTTGTTGCTTATCGGAGGGGTGCTACAAAGACATTTCTACTGAATATTTTTGGATGGGAAAGCGTGAGGTGTATGCTGAAATGCTTTCAGACTCCCTCAATGTATCAATTGCATACTCTCAATCCGGTGGTCCAAACAGCAACAGTCGTCTTATCTGTGAGCTATGCATATCTCGGCTGCGGGACGCTTCAGACTTTAAGCGGCAGGTGCTTGAGTGTGAGAAGACTTTCATGCAACACTTGGATGCTAGTAGCTCTACGCTTCAAGAACTAGATGTTCAAGTGGAGCCAGTAGACTCGGACGTCAAATTGGAGCGAGTGAAACAAGAGAAACGACTGAGCGATGATGATGATGACTTTGACGACCGATGCGGCTTTGATGATGATGATGATGACCTTGACGACCAACCCCTCACGAAATTAGCAAGTAAAATACCCAAAAAGGAATCCGTAGACCTATTAGACCTCCTGGACAATACTAAGGCAACAGAAAAACGAAAATCTTCCACCAAAACTAAGTCGGTTCCTGCTAAAAAAACCAAGACTGTGAAAAAGGAGCATGTGAAAGCCAGCGCTAGTAAAGTGGCAGCTAAAACTGAGAAGAAGAAAAAAGCGGAAAGCTATGATGCGACGCGCGCAAACGCCGAGACAATAATCAGTAGCACGAGTGCTTACCCCTTCCGAGTGAATGATAAGTCGATACTCTGTGTCTACTGCCAAGAGTTGTTCGAAGACCCTGACGAGTTCCGAAGACACATGGACGGAGAACATGACTACTTTAGCATCAAAGTCGCGTTCCATCACCTCCCTAAAACGGAATTCATTAAAGCAGACCTCACTAACTTACGCTGTAGGTTATGCAACACCGGTTTTCCGACCCTAGAAACGGTTTTGGCTCATTTAGACACCGAACATGACAGAAAAACTGATCCTGCTGGGAAATTCGGCGTCATGCCTTACTTGCTGCAAAAGGACGTTTATAATTGCGCGGTTTGCGAGAAAAACTTCCCATCACTTTTCCACTTAAACCGACACACTATCACGCATTTCCTAAGCTACGTCTGTCACGTTTGTGGGAGCAGTTATGTAGCAACCACTGGCCTCTTAAGACACGTCCGATCCAAACACCAGATTTATGAAGTATCCTGTAAAAGATGCAAGAAAGTGTTCCCGACAATGGAAGCGAAAGAAAAGCATAGGCGAACGCAGAAATCCTGCATGCCTTACTGCTGTCCGAAATGCCAAGAAAGATTCCTTGATTATAAGAGCAGGAAAAAACACATGGAAGTTGCACACGAGTTCGATCCGTTGGTCGAAGCGAGACAAAACGCTAAGCTCATTTTGAGGTACGCTACGGCTTATCCATTCAGGATCCCCGCTAATGAAATGGTGTGTGTTTACTGCTGCGACGCCTTTGAAGACCCGGAGGCGTATAGAGAACACATGAAAAACGATCACTACCAACCCAACGTCAAACATGCATTCGCGCACACCGTGGGGACAGAGGAATACCTCAAAGTTGATTGCACAGACTTAGGTTGCAAGCTCTGCGCTAAAAAATTCGACTCTCTGGCTTCTATATCTGAACATCTGGTCTTGGAACACAACAAGCATTTAAATCTTAGCGCGGAGATAGGACTACAGATTTTCAAATTAGGCCCCGAAAGATGGGTGTGCGCCACATGTTTTCAAAAGTTCCCGTCACTCAGATGCTTATCTCGGCATAACAGCGGGCACTACCACAAGTACACCTGCGAGACTTGTGGCAAATCTTACATCAGTCGAGACAACTTGAGGAAGCATATCCTCTTCAGCCATTCCGAGGAAAAGATATGTACTAAATGTAGAAAGTCTTTCCCTAACATTGAGGAGCGTCGCGCGCATGTTTTGGCGAGCAAACGATGCTGGCCTTACTGTTGCAACGTATGTGGCCACAGATTCGTCTCCAAAAAGCTTAGATGCGACCACATGAGTGAAGTCCACAATGTAGAGAACACAAACAAGCTTCACACCTGTCCTGTTTGCCAGGAATCTTTCGCGGAGTATAGACTGTATAGATCACATTACATCATTACCCATACTGATGATAACTATGTCTGTCAGTTCTGCGGCGAAAAATTTGCAAGCAAAAGCcgcttggaaggtcataaactgttgcatacgagggagaaactcttccattgcacttcctgcaccaaatcctttcttaggaagaagaatttgacgcaacatatgtggattcacagtgaacataagagatttcactgcactttgtgcaataggccgtttaatcagagagttagttggaagactcatatgaggtcttaccatccggagtTGGTCGACTTTTGA
- Protein Sequence
- MEAKTTEWRAGPSVCRCCLSEGCYKDISTEYFWMGKREVYAEMLSDSLNVSIAYSQSGGPNSNSRLICELCISRLRDASDFKRQVLECEKTFMQHLDASSSTLQELDVQVEPVDSDVKLERVKQEKRLSDDDDDFDDRCGFDDDDDDLDDQPLTKLASKIPKKESVDLLDLLDNTKATEKRKSSTKTKSVPAKKTKTVKKEHVKASASKVAAKTEKKKKAESYDATRANAETIISSTSAYPFRVNDKSILCVYCQELFEDPDEFRRHMDGEHDYFSIKVAFHHLPKTEFIKADLTNLRCRLCNTGFPTLETVLAHLDTEHDRKTDPAGKFGVMPYLLQKDVYNCAVCEKNFPSLFHLNRHTITHFLSYVCHVCGSSYVATTGLLRHVRSKHQIYEVSCKRCKKVFPTMEAKEKHRRTQKSCMPYCCPKCQERFLDYKSRKKHMEVAHEFDPLVEARQNAKLILRYATAYPFRIPANEMVCVYCCDAFEDPEAYREHMKNDHYQPNVKHAFAHTVGTEEYLKVDCTDLGCKLCAKKFDSLASISEHLVLEHNKHLNLSAEIGLQIFKLGPERWVCATCFQKFPSLRCLSRHNSGHYHKYTCETCGKSYISRDNLRKHILFSHSEEKICTKCRKSFPNIEERRAHVLASKRCWPYCCNVCGHRFVSKKLRCDHMSEVHNVENTNKLHTCPVCQESFAEYRLYRSHYIITHTDDNYVCQFCGEKFASKSRLEGHKLLHTREKLFHCTSCTKSFLRKKNLTQHMWIHSEHKRFHCTLCNRPFNQRVSWKTHMRSYHPELVDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908201;
- 90% Identity
- iTF_01526382;
- 80% Identity
- -