Doo016415.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411735.1:20363557-20365263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 2.9 9.6 0.4 1 23 153 176 153 176 0.95 2 10 1.3 1.6e+02 4.1 0.1 2 23 180 202 179 202 0.90 3 10 0.0045 0.54 11.9 2.3 1 23 204 227 204 227 0.96 4 10 1e-06 0.00012 23.4 0.8 1 23 230 252 230 252 0.98 5 10 0.00015 0.018 16.5 0.4 2 21 257 276 256 277 0.93 6 10 4.5e-05 0.0055 18.2 0.3 1 23 296 319 296 319 0.93 7 10 9.4e-06 0.0011 20.3 2.9 1 23 325 347 325 347 0.97 8 10 0.00031 0.038 15.5 1.2 1 23 353 375 353 375 0.99 9 10 0.0016 0.19 13.3 0.6 1 23 381 404 381 404 0.95 10 10 0.00012 0.015 16.8 3.2 2 23 410 431 409 432 0.94
Sequence Information
- Coding Sequence
- ATGGTTGAGGAGTCAGAATTAAATGTGCTTGTGTCAAATGTACTGAGCGAAAATCGGTACAGCCATTGCAGGTTATGCCTAAAGGATATACAGGAACATTACGTTCGTTTTCATGATTCTGTGTCGTTGGACTCTTCGAGTGGGATTTATCAAGCGCTTTCTGAAATACTAACGAAACTGTTAGGGGCTGAAATCTGTGAAGAGATTGCTGGGATTGATGCAGTGTGTATGCCATGTGTAGACAAAGCACTTGAATCACTAAAGTTCCTAGAATCTTGTGAAAAATCAACCAATGTACTAAATAATGTCTTTAACAGTCTCTCCAACACACTGACTGTTGATATTGACACCACAAGTACAGATCATACTCTGTACATATCAGTCAGTGAACATGAGTCTCAACTTATTTTGGTTAACAATGAAGCAAAGAAGAACAAAACTCAAGCAGCTAATATTTTTCAGTGTACCAAATGCAATGTACAATATGAAGATATAATGGAGCTTAGAGTACATAACATGTCTACTCATGCTATACTTACATGTGAGAAATGCTACGATAATGTAACTGACGAGAGTGAACTGGCTGCCCATGAAGACAGCCAGCATCAGTATGAATGTTCCGAATGCAATCAATTTAGATGCACAGAAGAAAGTTTGAAACAACATCAGGATAGAGCCCACGGAGTGTTTGTATGTAAGGACTGTGGCAAGTCTTTCAAAAGTATAGATAAACTGCAGATCCATGAACAAAAACACATCTCCAAAAGTGAATGTCCCAAGTGTGGTAAAAGCTACAACACTAAAGGATTCTTCTTGAAACATGTCAAGTTATGTCTGGAAGACTTGTTGGACCCGCATCCAATAAGAAGTAAAATTGTGAAGACATATTTTTGTGACAAGTGTGGAAAGGGTTACAGCACTCCAGGAGGTTTACGGGTCCATAATAGATTTGTTCATGGTAATGCTAAGCCACATACTTGTAAATATTGTAATAAGCAGTTCACTGCTCCAAGTTACTTGAAGGTGCACATGGTGAAGCACACTGGAGAAAAGAATTTCAAGTGTGACCTGTGCAGTAGACTGTTTGTGTCTAAAGAGGCATTATTGTACCATACTAGGAGACACACAGGGGACAAGCCATACAGTTGCACATTCTGTGATGAGAAGTTTGTGAATGCCTCGGCTAGGGCTGAGCATATAAAGTTCAAACATGTTGGTCCTACCCTTATGTGTGAGATTTGCTCTCGCAAATTCTTCACCCCTAACTTTTTGAAGCAGCATATAAGAAAACATCATGATCCTTCTAACAAGTTGTATGCTGGCAGGAGTCTAATACCGCCTAATGTTCCAGCTGTAGAGAATATGAGAGTTAGGTTTATTGACTGA
- Protein Sequence
- MVEESELNVLVSNVLSENRYSHCRLCLKDIQEHYVRFHDSVSLDSSSGIYQALSEILTKLLGAEICEEIAGIDAVCMPCVDKALESLKFLESCEKSTNVLNNVFNSLSNTLTVDIDTTSTDHTLYISVSEHESQLILVNNEAKKNKTQAANIFQCTKCNVQYEDIMELRVHNMSTHAILTCEKCYDNVTDESELAAHEDSQHQYECSECNQFRCTEESLKQHQDRAHGVFVCKDCGKSFKSIDKLQIHEQKHISKSECPKCGKSYNTKGFFLKHVKLCLEDLLDPHPIRSKIVKTYFCDKCGKGYSTPGGLRVHNRFVHGNAKPHTCKYCNKQFTAPSYLKVHMVKHTGEKNFKCDLCSRLFVSKEALLYHTRRHTGDKPYSCTFCDEKFVNASARAEHIKFKHVGPTLMCEICSRKFFTPNFLKQHIRKHHDPSNKLYAGRSLIPPNVPAVENMRVRFID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425368;
- 90% Identity
- iTF_00906426;
- 80% Identity
- -