Basic Information

Insect: Dicycla oo
Gene Symbol: -
Assembly: GCA_948252095.1
Location: OX411722.1:24909201-24911720[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2e-07 6.4e-05 23.7 0.0 1 40 14 53 14 54 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2e-07	6.4e-05	23.7	0.0	1	40	14	53	14	54	0.92

Sequence Information

Coding Sequence: ATGGAGTCAACAAAAAAAAAGAAAAAGACTGTCAAGTACACAGAAGAAGCACTGAAAAAAGCTCTCGATGATATCCGAAAACAAGGGAAGGGAATAAGAGAAACATGTAGACTGTATCAGATCCCAAGGACCACGATACAAGATCGCCTTAGTGGGAAGAGGTGTGATACAATCGAGACAAGGGGACCAGATCCTGTATTGGGTATAGAAGGCGAGAAACAAATTAAAGAGTGGCTTTTGGACATAGCAAAATGTGGATTCCCGGTCAAGAAACAGGAGCTGTTGGACACAGTACAGAAAATTGTTAAAGATAACGGAACAAAGAATCCTTTTAAGGATGATCGTCCGGGGCAAACCTGGTACTCAAATTTCCTAAAACGTCATCCCGACATATCATGCCGTGCTGCCGAAGGAATTAATAAAGCCAGAGCGAGAGTAACTGAAGAAGCCATACGCGCCTGGTTCAATGATTTGAAAGAGTTCTTGAAACAAACTAATAATGAAGATATATTAGAATGCCCAGAGCGCATATTTAATGGTGATGAAAGTGGCTTCTCTATGTGTCCAAAAACCGGAAAGGTCTTAGCGCCGAAGGGATACCGAAATTTATACCAGATCAAAGCGGGAAATGAAAAGGATAACTTAACCGTTCTGATCACCTTCAACGGCAGTGGCCAAGTAAGTCAGCCGCTCATTGTTTTTCCCTATATACGTCCACCACGAGCCGTTGTAGAGAGTATGCCCGAAGAATGGTGTCTTGGCAAATCTGAAAGTGGATGGATGCGCTCGGATGTATTTTTTGAATATATTACAAATGATTTCAATAGTTGGGTGGACCGCAATAGTATAAAAAAACCTATATTACTTCTAATCGATGGTCACAAGTCGCATATGTCACTGGTCTTGAGTGCCATGTGTGAAAAGCTTGGCATAATTTTGTATGCTCTACCCCCAAACACCACCCATATGCTTCAGCCAGCAGACGTAAGCGTTTTTGCTCCACTAAAGTCTTCATGGAAAGCGGTCGTCAGAAAATTTCTATCGAAACCAGAGAACGTAAATTCGTGCGTTAACAAAACCAACTTTTGTCAGCTGTTCCGTGACACGCTGGAAGACACGAACATGACCACAAATATAAAAAACGGATTTAGAAAATGTGGACTGTATCCGTTTAATCCCGATGCTGTGGATTACAGTAAATGTGTACAAAATACCCTCGAGAATGTTCACAAAGGACCGACGCATCTGTCAAAGGACATAACGAATGCGGATCTTGCTAGTACAAGAAAGGTACTAAAACATTTGAGACCAGTACTAAAACAAAAAAAGATTAATCTAAGTGTTATTTTGAAAGAACTGCGTAAATTAAAAACAAAGACTGGAAATCACGAAACCGATTCTGAAGATGTAACAGACCATTCAGTTGATCAGTCCACATCACTTCAAATGGAATATTCTGTTGAGGGTGTTTCAATAACTGATCCATCATTCCCGATTTTGACTAACATTAGTGACGTTTTGTCGTGCACAAATGATAAAAACAGAGTTGAAGAAGTAACAACATCTAATAATGAAAATAATTCAGCAGAATCTCATTCTATCATTGTCACAGCAGACGTTCATTCCGTCTCTCCACACGTTCTTCAAAAGCCTAATTATCCCGAAGTAGCGAGCGTCACGAATGAACAGATACATATTTCAAACAAGTTGATACCAGAGCCCGTTAGCCAAAACACGTTTGAGGAGATTTTACCATTTCCTGATGAAGATATAATAAGTGCTAGGCAAGATCTGACATGTAATGACAATTTACTCACGCTTAATTTAAACGAAGTACCAGAAGCCACTGATGATCAAACAGTGGAAATGTTGGGTACAATTTCACTATATCCTACAGAAGAAATACCAATTAACATAGGCGAAAATGTGACAGTTAATGACACTTTATCAACGCTCCATTTAACTGGAACGGATGTAGATAGTTACTTAGAAGTTGGATCATTAGTGTCTCTGGATGATGTGGTCGTCATATCTACTCCCAAAAATATGGCAATGTTGGGTACTGAGGCTTTCAGAAAACATTTGTTTATACCTGATCCACCACAACGAGCTCAACCAAAACAATTAAAAACACCTTCTGCCATATCATCTGGGGCATGGCGAAAATTTTACGAAGAAAAAGAAAATTTAAAAGCAGAAAAACAGGCGGCTACTTTAAAGAGAAAACAAGATAGAGCCGAAGCAGCAAAGCAGAAGAAATTAAAGAAAGATGTAAAACCACAAGCCAGGACTAGATCAACTGTACAAACCAAAAAAATAAATAAAAAAGTTTTAAAAGAACTATGCCCCGAATGTGAAGATATTTTAATTAGTGACACTGAAGAGGATGAAGACAAAAATGTAGGTTGCGATTTCTGTCAAAGATGGTACCATTTAAAATGTACCACCTTCGCTGGATCGTCATATCTTGATATTATAGATAAACCATTTAAATGTAATATTTGCATAGCTGATCAATAA
Protein Sequence: MESTKKKKKTVKYTEEALKKALDDIRKQGKGIRETCRLYQIPRTTIQDRLSGKRCDTIETRGPDPVLGIEGEKQIKEWLLDIAKCGFPVKKQELLDTVQKIVKDNGTKNPFKDDRPGQTWYSNFLKRHPDISCRAAEGINKARARVTEEAIRAWFNDLKEFLKQTNNEDILECPERIFNGDESGFSMCPKTGKVLAPKGYRNLYQIKAGNEKDNLTVLITFNGSGQVSQPLIVFPYIRPPRAVVESMPEEWCLGKSESGWMRSDVFFEYITNDFNSWVDRNSIKKPILLLIDGHKSHMSLVLSAMCEKLGIILYALPPNTTHMLQPADVSVFAPLKSSWKAVVRKFLSKPENVNSCVNKTNFCQLFRDTLEDTNMTTNIKNGFRKCGLYPFNPDAVDYSKCVQNTLENVHKGPTHLSKDITNADLASTRKVLKHLRPVLKQKKINLSVILKELRKLKTKTGNHETDSEDVTDHSVDQSTSLQMEYSVEGVSITDPSFPILTNISDVLSCTNDKNRVEEVTTSNNENNSAESHSIIVTADVHSVSPHVLQKPNYPEVASVTNEQIHISNKLIPEPVSQNTFEEILPFPDEDIISARQDLTCNDNLLTLNLNEVPEATDDQTVEMLGTISLYPTEEIPINIGENVTVNDTLSTLHLTGTDVDSYLEVGSLVSLDDVVVISTPKNMAMLGTEAFRKHLFIPDPPQRAQPKQLKTPSAISSGAWRKFYEEKENLKAEKQAATLKRKQDRAEAAKQKKLKKDVKPQARTRSTVQTKKINKKVLKELCPECEDILISDTEEDEDKNVGCDFCQRWYHLKCTTFAGSSYLDIIDKPFKCNICIADQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00407518;
90% Identity: iTF_00186121;
80% Identity: -