Doo019012.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411734.1:8098853-8099512[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-08 2.1e-05 25.2 0.0 2 37 16 51 15 60 0.88
Sequence Information
- Coding Sequence
- ATGCCTGGCAATTATCAAAGAAAGTCTGCACGTCATTCGTGGTCAAAGGAAGATATGGCGAAGGCCATTGAAAGCGTGAAAGAAAACAAAATGGGGTGGCTGAAGGCCCCGAAAACATTTAACGTGCCCCAGGCTACACTTCGTCGTCACTTCGTAAATGTTTCTATAAATTTAGGTCGTTTCAAGCCTACTTTTGAATCGGCCATAGAACAGCAGTTAGTGGAGCATACTCGTATACTTAGTTTTGAACAAAGATTCTTTGGGTTTAACACTACTGATGTCAGAAAATTAGCATATGAATTTGCAAAAAAGGCAGGACTGTCTCATAGATTCGATGAAGATACACAAATGGCAGGTTGGGATTGGTTAAAAGGGTTTAGAGAGCGCAACCCCTCCATCTCGTTGAGGGCTCCTGAAGCCACTTCCGCAGCAAGGGCGAGAGCTTTTAATAAGCCCCAAATGATGAAGTTCTTTGAGATCTTAGAGAAGCTGGTGACTGATAATGATATCCCACCGTCAAAAATTTATAACATGGATGAATCTGGCCTCAGCACCGTCCAAAAGCCACCAAAAATATTTGCACAGAAGGGGAAAAAACAAGTCGGTGCATTAAACAAGTGCCGAACGAGGCCAGCATGTCTCTATCGCTGTCTGTGCTAA
- Protein Sequence
- MPGNYQRKSARHSWSKEDMAKAIESVKENKMGWLKAPKTFNVPQATLRRHFVNVSINLGRFKPTFESAIEQQLVEHTRILSFEQRFFGFNTTDVRKLAYEFAKKAGLSHRFDEDTQMAGWDWLKGFRERNPSISLRAPEATSAARARAFNKPQMMKFFEILEKLVTDNDIPPSKIYNMDESGLSTVQKPPKIFAQKGKKQVGALNKCRTRPACLYRCLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01242527;
- 90% Identity
- iTF_01341189;
- 80% Identity
- -