Doo006066.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411738.1:13864696-13865343[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-08 7.4e-06 26.6 0.0 5 36 1 31 1 41 0.86
Sequence Information
- Coding Sequence
- ATGCGTGAAGCATTAAAAGCAATAAAAGATGGAAAAAGTGTAAGACAAGCTGCTGCTGACCATAATATTTCTTATACAACACTACAAAGGTATCAAACTAAAGAAAAAAACTCGCAAAACCAACTCACAAGGTTGACGCTAAAAAAAAATGCTATTGCAGAACAGAAGGCAGCAAAAAGGAAGAAAGAAACTAAATCTAAAGGGATAGGCAAAAAAGCTATTCATCAAGTGCTGCAAAGTGATTCAGAAGATGAAGAGGACTTGATATTAAACGAAGAAACAGACGATGAAGGAGACTGGGCCGAAAGTTTAGAGACCATTATAACAGAGGATTTACTAAAAAAATCACTTGAGCGATTACCAAATGAAGGTGAATATGTTTTGGTACAATTTTGTTCCAAAAATCAGAAGATATTTTTTGTTAGCAAAGTTCTTGAGGAACGAAATCCCAATACTTTAGAATTATATGTGTCTTTCTTAAGGTACAAAAAGGTTAAATTTGTTATGCCTAATGTCCCAGACTTATCATATGTGAAAGACGACGACGTAAGAGTAATATTGCCGACGCCCACAGTTAGTGGAAGCACTGCCAGGCAACAGTCATATTATAAATTTCATGTTGATTTAAGTCACATTAACATTCGTTGA
- Protein Sequence
- MREALKAIKDGKSVRQAAADHNISYTTLQRYQTKEKNSQNQLTRLTLKKNAIAEQKAAKRKKETKSKGIGKKAIHQVLQSDSEDEEDLILNEETDDEGDWAESLETIITEDLLKKSLERLPNEGEYVLVQFCSKNQKIFFVSKVLEERNPNTLELYVSFLRYKKVKFVMPNVPDLSYVKDDDVRVILPTPTVSGSTARQQSYYKFHVDLSHINIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -