Doo012953.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- tc3a
- Assembly
- GCA_948252095.1
- Location
- OX411716.1:2308063-2310091[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.39 1.3e+02 3.5 0.0 18 29 103 114 102 115 0.92 2 2 7.2e-07 0.00023 21.9 0.0 2 41 354 394 353 396 0.91
Sequence Information
- Coding Sequence
- ATGAGTTCAAACTATTCCAATGTGGAGTGGTTGGATATGGTGCGTTTTTACGCAATTGCTGGTGACAATCTGGCGGAAGCTAGGCGCATGTACTCTCAACCAGATCATTTAGCGGCGCTGCGCATGCGAGGGATCTTGAACCCGCAAATTCCCACACCTGCTACAATACTGGCAGCTACACAGCGGTTACTGGATCACGGCCAGTTCACAGTGCCGATTCATGCCCAAGGACGTGGTATTGGTCCTCAGTACTCAGCCGCATTCGAAGAGCAAATACTCGAGTACTTCACACGCAACCCACGGAATAGTACCAGAGATGCAGCAAGGCGATTTGGTGTCAGCCAATTTTTCGTATGGCACCTGCTGAACCGAATGGGAAAACATCCGTACCATTTCCGTCGCACGCAAGGACTTTATGACGCTGACCCCCAAGCACGCATAGCTCTGTGTACGTGGCTGCTGAATAATCCAGAAGTGAACATTCTATGGACGGATGAGTCTACCTTCACGCGTGTAGGAATTTTTAATATTCACAATGAACATTATTGGGCGTTTAACAATCCACACGCAATAAAACAACACTCTCACCAAATTCGATTCAGTGTAAATGTGTGGGCCGGCATTATTAATGATGAGTTAATTGGGCCAGTGTTCATCGATGGGAATTTAAATGGTGCCACCTACTTGGACATTCTGACAAGAGCGATACCCGAGTTAATGGAAGGCGTTCCTGTGGCTTCTCTTCAGGAACTGTATTACCAACATGATGGTTGCCCCGCACACTATGCGACTCAAGTACGCACGTACTTGAATAATGAATTTGGTGAAAGGTGGATTGGGAGAGGTGGTCCAGTGGCATGGCCAGCCAGAAGCCCCGATTTAACTCCACTGGACTTTTATTTGTGGTCGGAGGTAAAAAGGCTGGTCTACACTGAAGAAGCTACCAGTCGGGACCAGCTAAAACAAAAAATTGAAAatatattcaagatgcctccaaaaagtcgtgtcaaacaaagaaataGAAGACGTTTGGGAGCGCGAAGTTACAAAAATTACTCTGAAGAGATGCTATTATTGGCTGTTGATTTAGTTAGAAACAAAAATACAACTTCGTACGAAGCTGAGAAGCAGTTTGGCATACCCCGGCGGACTATAGAAAAAAGAGTCAAAAACCTGCATACTGATAAACCTGGCCCGCGCTTCCGTCTCTCTAAAGAAGAAGAAGAAAAATTTATCAAAGTTCTCATAGCGGCGGGTGACTTCGGATGCCCGCTATCACAGTTGGACTTAAAATTGGCAGTTTAA
- Protein Sequence
- MSSNYSNVEWLDMVRFYAIAGDNLAEARRMYSQPDHLAALRMRGILNPQIPTPATILAATQRLLDHGQFTVPIHAQGRGIGPQYSAAFEEQILEYFTRNPRNSTRDAARRFGVSQFFVWHLLNRMGKHPYHFRRTQGLYDADPQARIALCTWLLNNPEVNILWTDESTFTRVGIFNIHNEHYWAFNNPHAIKQHSHQIRFSVNVWAGIINDELIGPVFIDGNLNGATYLDILTRAIPELMEGVPVASLQELYYQHDGCPAHYATQVRTYLNNEFGERWIGRGGPVAWPARSPDLTPLDFYLWSEVKRLVYTEEATSRDQLKQKIENIFKMPPKSRVKQRNRRRLGARSYKNYSEEMLLLAVDLVRNKNTTSYEAEKQFGIPRRTIEKRVKNLHTDKPGPRFRLSKEEEEKFIKVLIAAGDFGCPLSQLDLKLAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -