Doo034196.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411730.1:24631414-24639407[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-08 3.8e-06 27.6 0.0 1 38 72 108 72 110 0.96
Sequence Information
- Coding Sequence
- ATGACTATGCCATATGACTCAGACCCACCCATTAATTCTTTTGTCATGCTCCCCCCCCCTGATGAAAAAGAAGTATTTTTCCTCATCAATGATTTGAAGGAGAAGtgtgctgtaggacatgaccagatatccggcaaggtcttaaagagAACCACTTATCCACCTACCATGAAGCCAAAGGATAAAAATAAACCAAATAAACGAAAAATGTACACAAACGAAAATCTACTAAAAGCCTTGGATGCAGTTAAAAAAGGTATGTCTAAAAAACTGGCCTCGAAAACTTACAATGTGCCAAGAGGAACTATCCAGTCGCGATTAAGAAAGCCGTGCAATGATCTACCAGGTCCTAGGCCAATATTGTCGACAGAAGAAGAAGGAGTTTTGGTACAGTGGGTTGTAGATTGCTGTCGGAAAGGATTTCCAAAAAGAAAATCTGATTTACAATTAAGCGTAGCAAACTTCTCAAAGAAGTCAGGAAGAGAAAACCCCTTTAAAGATGACATACCTGGAAAAAAATGGTATGACCTTTTTATGCGCCGTCATCCAGAACTCAGCGAACGCACTGCCGAAGCTGTCACATCAGCCAGTGCTAATGTGTCAGAAAAAGACATCAAAGGGTGGTTCCACAAAATTGAGCTTTACCTTAAGGAAAACAACTATTTTGACATCTTACAGGACCCAGCTCGTGTTTTTAATGGGGACGAATCTAACTTTCAGTTATGTCCCAAAAATGGCAAAGTTATTTCGTTACGAGGAGAAAGAGACGTGTATGAAGTGGATCACGCTACAGCTAAAACAGCCCTTACTGTACTGTTTACATTTTGCGCCAACGGAGACGTAACACCTCCATTAGTTGTGTTTCCCAACAAGAGGCTTCCCAAAGATATAACATCATCAGTTCCAGATGAGTGGGGCATTGGTCTAAGCGATACTGGCTGGATGAAGTCTGAACTTTTCTATGATTATATAAAAAATGTGTTTCATCCTTACCTCTACAAAAGAAAGGTAACATTTCCTGTCATACTATTTGTAGATGGACACAAAACACATCTCAGTCTTGAAGTAAGTGAATTGTGCAGCAAATTGCAGATTGTTTTGATAGCACTTTATCCCAACGCCACACGGATTCTACAACCAGCTGACGTGTCAGCATTTAGACCTCTCAAAACTGCATGGAAGGAAAGTGTCCTGAAATGGAGGAGAGATCATCCTTTGGAGACTCTCACAAAGAACAATTTCGTACCTGTTCTCAAGGATGCTTTAGAGGTCGGTGTCAAAGATACGACAATTATAAATGGATTCAGGACTACTGGCTTATGTCCCTGGAACTCTGGTGCCATTAACTACAATAAATGTCTGGGTAAAGGAAGTAAACAAGATGGAGAACCAAAAGAAGACAATTTAAAACTACAAGACAATTCAAATAAAGAAAAAATTATGACACGCGAAATTTTAGAAAACTTTGTAGGGCATGAAAAGGTAACATTTCTGCAAAGAACGCCGCTTGAAAATCTGACAGAAACAGAAAGGATTTTGAAGAAAATTTGTTGTTTTTTTGAAAATCAAGAAACTAATACGTCCATAAACAAAGAAACTCACATCGAAATTGAAAATTTCGAAGCAGTTGGATTTCAAGACATTGATCAATTACCAGTAATATTAGCAGAAGATTTTGTAGATGATATGCAAGCTATGACCGATTCTATAGCGAATGAACAATGTTATAACAATACTGAAGATTGTCTCGGTAGTGCGCAATTGGTATGTTTTGATAGTCAACAATATTTACTAACACCTGTCAAATTACAGGACGTTTTGATTGTTGAAAAAACACCTGAACGAAAAGGTGTTAAAAATGTAGAGAGATCATCATTCGTGCTTACTTCAGCGGAATGGCAGAAGACTGAAAATGACAAATTAAAAGCTAAAAAACTAAAAGATGAAGAACAAGAGACCCGCAAAAAGAATAGATTACTTAAACAAGATGAAAAAAACAAAACAAAAGAAACCACCAGAAACAAGATTAACAAGAAAGCAAAAGGGACAGTAGAAACTAAAAAACAAGAGACTGAAGCTAATCTTATACAGGAGACTAAACTAAATAAAACTACAGTAGAAACCACCAGAAACAAGATAAACAAGAAAGCAAGAGGCAATAGATACTAA
- Protein Sequence
- MTMPYDSDPPINSFVMLPPPDEKEVFFLINDLKEKCAVGHDQISGKVLKRTTYPPTMKPKDKNKPNKRKMYTNENLLKALDAVKKGMSKKLASKTYNVPRGTIQSRLRKPCNDLPGPRPILSTEEEGVLVQWVVDCCRKGFPKRKSDLQLSVANFSKKSGRENPFKDDIPGKKWYDLFMRRHPELSERTAEAVTSASANVSEKDIKGWFHKIELYLKENNYFDILQDPARVFNGDESNFQLCPKNGKVISLRGERDVYEVDHATAKTALTVLFTFCANGDVTPPLVVFPNKRLPKDITSSVPDEWGIGLSDTGWMKSELFYDYIKNVFHPYLYKRKVTFPVILFVDGHKTHLSLEVSELCSKLQIVLIALYPNATRILQPADVSAFRPLKTAWKESVLKWRRDHPLETLTKNNFVPVLKDALEVGVKDTTIINGFRTTGLCPWNSGAINYNKCLGKGSKQDGEPKEDNLKLQDNSNKEKIMTREILENFVGHEKVTFLQRTPLENLTETERILKKICCFFENQETNTSINKETHIEIENFEAVGFQDIDQLPVILAEDFVDDMQAMTDSIANEQCYNNTEDCLGSAQLVCFDSQQYLLTPVKLQDVLIVEKTPERKGVKNVERSSFVLTSAEWQKTENDKLKAKKLKDEEQETRKKNRLLKQDEKNKTKETTRNKINKKAKGTVETKKQETEANLIQETKLNKTTVETTRNKINKKARGNRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00850626; iTF_00835523; iTF_00835522; iTF_00794474; iTF_00794471; iTF_00794475; iTF_00820004; iTF_01158854; iTF_01158902; iTF_00667336; iTF_00745609; iTF_00745610; iTF_00449003; iTF_00147341; iTF_00147342; iTF_00449005; iTF_00150446; iTF_00449009; iTF_00449011; iTF_00007032; iTF_00007033; iTF_00034648; iTF_00771838; iTF_00172787; iTF_00172784; iTF_00172786; iTF_01544821; iTF_00034649; iTF_01034524;
- 90% Identity
- iTF_00850626; iTF_00745610; iTF_01158854; iTF_00667336; iTF_00745609; iTF_00034648; iTF_00771838; iTF_00449003; iTF_00147341; iTF_00147342; iTF_00150446; iTF_00172784; iTF_00449009; iTF_00449011; iTF_00172787; iTF_00172786; iTF_00007032; iTF_00007033;
- 80% Identity
- -