Doo003763.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411714.1:13627319-13632763[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-09 1.8e-06 28.6 0.0 1 38 29 65 29 67 0.96
Sequence Information
- Coding Sequence
- ATGGTCCAGAGTAAAGGTAGAACCACTTATCCACCTACCATGAAGCCAAAGGATAAAAATAAACCAAATAAACGAAAAATGTACACAAACGAAAATCTACTAAAAGCCTTGGATGCAGTTAAAAAAGGTATGTCTAAAAAACTGGCCTCGAAAACTTACAATGTGCCAAGAGGAACTATCCAGTCGCGATTAAGAAAGCCGTGCAATGATCTACCAGGTCCTAGGACAATATTGTCGACAGAAGAAGAAGGAGATTTGGTACAGTGGGTTGTAGATTGCTGTCGGAAAGGATTTCCAAAAAGAAAATCTGATTTACAATTAAGCGTAGCAAACTTCTTAAAGAAGTCAGGAAGAGAAAACCCCTTTAAAGATGACATACCTGGAAAAAAATGGTATGATCTTTTTATGCGCCGTCATCCAGAACTCAGCGAACGCACTGCCGAAGCTGTCACATCAGCCAGTGCTAATGTGTCAGAAAAAGACATCAAAGGGTGGTTCCACAAAATTGAGCTTTACCTTAAGGAAAACAACTATTTTGACATCTTACAAGACCCAGCTCGTGTTTTTAATGGGGACGAATCTAACTTTCAGTTATGTCCCAAAAATGGCAAAGTTATTTCGTTACGAGGAGAAAGAGACGTGTATGAAGTGGATCACGCTACAGCTAAAACAGCCCTTACTGTACTGTTTACATTTTGCGCCAACGGAGACGTAACACCTCCATTAGTTGTGTTTCCCAACAAGAGGCTTCCCAAAGATATAACATCATCAGTTCCAGATGAGTGGGGCATTGGTCTAAGCGATACTGGCTGGATGAAGTCTGAACTTTTCTATGATTATATAAAAAATGTGTTTCATCCTTACCTCTACAAAAGAAAGGTAACATTTCCTGTCATACTATTTGTAGATGGACACAAAACACATCTCAGTCTTGAAGTAAGTGAATTGTGCAGCAAATTGCAGATTGTTTTGATAGCACTTTATCCCAACGCCACACGGATTCTACAACCAGCTGACGTGTCAGCATTTAGACCTCTCAAAACTGCATGGAAGGAAAGTGTCCTGAAATGGAGGAGAGATCATCCTTTGGAGACTCTCACAAAGAACAATTTCGTACCTGTTCTCAAGGATGCTTTAGAGGTTGGTGTCAAAGATACGACAATTATAAATGGATTCAGGACTACTGGCTTATAA
- Protein Sequence
- MVQSKGRTTYPPTMKPKDKNKPNKRKMYTNENLLKALDAVKKGMSKKLASKTYNVPRGTIQSRLRKPCNDLPGPRTILSTEEEGDLVQWVVDCCRKGFPKRKSDLQLSVANFLKKSGRENPFKDDIPGKKWYDLFMRRHPELSERTAEAVTSASANVSEKDIKGWFHKIELYLKENNYFDILQDPARVFNGDESNFQLCPKNGKVISLRGERDVYEVDHATAKTALTVLFTFCANGDVTPPLVVFPNKRLPKDITSSVPDEWGIGLSDTGWMKSELFYDYIKNVFHPYLYKRKVTFPVILFVDGHKTHLSLEVSELCSKLQIVLIALYPNATRILQPADVSAFRPLKTAWKESVLKWRRDHPLETLTKNNFVPVLKDALEVGVKDTTIINGFRTTGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745603; iTF_01158883; iTF_01158888; iTF_01158834; iTF_00198058; iTF_00007029; iTF_00172770; iTF_00794451; iTF_00172768;
- 90% Identity
- iTF_01158883;
- 80% Identity
- -