Doo008242.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411720.1:13760043-13761875[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-10 1.8e-07 31.8 0.0 1 41 22 62 22 66 0.92
Sequence Information
- Coding Sequence
- ATGCCTCCTGAGAGGAAGAAACTTAAAAAAAATATTAAAAAAACGAGAACTCATTTTCAATATACCGAAGAGGCGTTAGCTAAAGCTGTTCAGGCCATAAGAATTGAAAAAAAAAGCATTAGAGAAACTTGTCGTCTTTTTGGTGTTCCTCGGGCAACAATCCAAGATCGAATTTCGGGTAGAACTAAAGAACAGCCTCGAAAAGTTGGTCCAGAGCCTATATTAGGCCTTGATGGAGAGAAAAAAGTTGTGGACTGGATTATAGATTTAGCAAAATGTGGTATTCCTGTAAGCAAAGAAGTATTGCTGGAAACAGTTACAAAATTAATAAAAGATATTGGAAAAGAAGATAAGTTTCCAGAAGGGCGACCAGGACAAACATGGTACCAAGGTTTTCTTAGAAGACATCCGGAGATTAGCTTACGTGAACCTGAAAGTATTAATAAAGCCAGGGAAGCGGTAAAAGAGAGCTCAATCAGAAAATGGTTTACAGAGCTTGAATATTTTTTGACTGAAAGAGGAATGGCAGACATCATGAAAGATTCTGACAGAATATTAAACGGTGATGAGACTGGAATTTCACTATGTCCAAAATCAGGTAAAGTCTTAGCCCCGAGAGGTTACAAAAATGTTTACGTTGTTAAAAGAGGCAACGAAAAAGAAACACTTACGGTTTTAATAATGATGACTGCATCGGGGAAAGTATGCCCTCCACTTGTGGTGTTTCCATACGTTAGACCGCCAAAAGCGGTTGTAGAAAACATGCCAGAAGGTTGGATAATAGGAAAATCTGAATCAGGTTGGATGCGTTCAGATGTTTTTTATGAATACATTGCTAACGACTTTAATGACTGGTTAGTGAAGAATAATATAAAGAAACCAGTAATCCTTTTCGTAGATGGGCATAAATCACATATGTCAATGGCCTTAAGTGTTTTTTGTGATGAAAATGGCATTGTTTTATACGCTTTACCTCCGAATACTACTCACATTATGCAACCAGCCGATGTTAGTGTGTTTAAACCTTTAAAACAAGAATGGAAAAAAACTTTAAGAAACTGGCAGGCCAAATCGGAAAACCTCAATAAAACCGTGACGAAGACAAATTTTTGCAAAGTATTTAAGGAAACCCTGGATGTAGATATGACACAATCTATTAAGAACGGATTCAGAAAGTGTGGCCTATTCCCCTTCGATGTAGATGCAGTAGATTTCACAAAATGTGTAAAGGATTTTCAAGAAAGAAGGAAGAAGAGATCACTATCTTCCGGCGGGTTAACGGACCGAGATTTCACAAGTGCAGTAAAAGTGATTGTTGCGATAAAAGAAAATTTATTGAAGAAAGGGATTGATCCAGATACGGTCTGCAGTGAAATAGAGTTATTAAAATCGTCCTTCAGTAAAAATCGACGGTCAACTTCCAAAACACCACGTAAGTCTACTGAAGTTGTTAATTCTTCTGCGTTTAAAACACCTGAACAAATTAATTTTGACGATAATATGATAAGAAAGGCAAATGTCAATACTGCTGGAGGAGATGGTGTTAATGAAGACTATTCTTTGCTTGATGATATCTCATTTCCTGATGTTGGAGCGTACGTATCGCTAAGTGACATTTCTATTTTAAAAATAGCCGACATAAACTTAGAGGATTCAAATGCAACCCAAATTACTTTAGAAGAGATTCCTCAAGACGATAAACAGTATGATTCAGCACAGGCATTGTTACCTCTACAAAGTGACTGTGTACCATCTACGTCAAAGATAATTACAGTAGCTGAAGTACACACTCACCAGTCGCCATTCGTCTCCAAAAAATGCGATCCATCATAA
- Protein Sequence
- MPPERKKLKKNIKKTRTHFQYTEEALAKAVQAIRIEKKSIRETCRLFGVPRATIQDRISGRTKEQPRKVGPEPILGLDGEKKVVDWIIDLAKCGIPVSKEVLLETVTKLIKDIGKEDKFPEGRPGQTWYQGFLRRHPEISLREPESINKAREAVKESSIRKWFTELEYFLTERGMADIMKDSDRILNGDETGISLCPKSGKVLAPRGYKNVYVVKRGNEKETLTVLIMMTASGKVCPPLVVFPYVRPPKAVVENMPEGWIIGKSESGWMRSDVFYEYIANDFNDWLVKNNIKKPVILFVDGHKSHMSMALSVFCDENGIVLYALPPNTTHIMQPADVSVFKPLKQEWKKTLRNWQAKSENLNKTVTKTNFCKVFKETLDVDMTQSIKNGFRKCGLFPFDVDAVDFTKCVKDFQERRKKRSLSSGGLTDRDFTSAVKVIVAIKENLLKKGIDPDTVCSEIELLKSSFSKNRRSTSKTPRKSTEVVNSSAFKTPEQINFDDNMIRKANVNTAGGDGVNEDYSLLDDISFPDVGAYVSLSDISILKIADINLEDSNATQITLEEIPQDDKQYDSAQALLPLQSDCVPSTSKIITVAEVHTHQSPFVSKKCDPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888173; iTF_00888178; iTF_00888176; iTF_00888177;
- 90% Identity
- iTF_00888178;
- 80% Identity
- -