Doo034823.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dicycla oo
Gene Symbol
shd
Assembly
GCA_948252095.1
Location
OX411731.1:12506088-12515213[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.9e-10 1.6e-07 32.0 0.1 4 43 233 272 230 274 0.91

Sequence Information

Coding Sequence
ATGTTACGTAACGAGAGACAGTTACGCAAAGCCAATGTCAAGAGCGCCGCGTCAACGTTGTACCATCCATCGGCGCGGGCGTCGAGTCCGCACACACGCCGCACGCGCCCCCCAGCACGGCCACACGCCGGGTCAACGACCACGATACCAAACAAAATCTTAAAGCCAAAACTTGAACTTGAACAAAGATTTGAGAAGCTGATATTGGCAAAAAGATTTAAAAGAATCGACAGCACGTCGCCACCCCTGGTGGACTGGTCGTACGTGCCAACGCTAGTGTTGGCTGTGATCCTGGTATTAGTTGCGGCGACGGCGCTGGCTGCACGCGCGGCGGATGGCAAGCAGTCCACGCGCCTGCCTGGACCGCAGGCGCTACCCTTCCTGGGCACTCGATGGCTGTTTTGGAGTAGATATAAGATGAACCAGCTACATGAAGCTTATGAAGACATGTTCAGGCGTTACGGGCCGGTATTCGTCGAGACGATGCCAGGGGGCGCATCTGTGGTGTCCATTGCTGAACGTGCAGCACTGGAAGCGGTGCTGCGGGCACCGGCCAAGCGGCCCTACCGTCCCCCCACCGAGATCGTACAGGTCTACCGAAGGAGCAGGCCTGATAGATACGCTTCCACCGGACTTGTCAATGAGTTACAAAATATGTCAACTGCAAAGAAAAAGCGTGCCTCATGGACACAAAGTGATTTAGAAGCTGCTGTTACTGCTGTTCAGACAAACAGTTTATCTAGTTATAAAGCAGCTAGTAGTTATAACATCCCTAGAAGAACATTACGAGATTATTTAAAGAGTGGAATGTCCAAACTAAATTTAGGTAGAAGATCAATATTTACTAGCGAACAGGAACAAGATTTTGTGAAAAGGATAATTAGATTTGCAGATTTGGGGATCCCGTTAACGCCAAAGATGATACGCAAACAAGCATTTGTGTTTTGTGAGGCATATAACATTACTAACAATTTTAACAAGCAATTAGGTATTGCCGGACGAGACTGGCTCAAGCTATTCCTAAAGAGAAATAGCAATGTAGCAAAACGCAAAGCCCAATTTCTAAATCAAGCCAGAGGCCAAAAACTCAACAAAGCAATCGTTTCACATCATTTTAAAGAAGTGGAAAAATTATATGACGAATCAGGAATACGTTACAATCCAGAGAGGCTTTACAATATGGATGAAAAAGGTTGCCGTTTAACGATGCATAAACAACCTACAGTAATCGCTCAGAAAGGAGCAAAAAGAGTTCATTTACAAGCATCTGAACATGGCGAAAATGTCACGATCGTGGGTTGTGCTAACGCGTTGGGGAATTCAATACCGCCGATGATTATATTTAAAGGCGTTCGAAGGAAGCCAGAATTCGAATTAAATCTGCCTCCAGGTTCAACTGTAAGAATGGCTCCGAAGGGAAGCATGACTTCAGAGCTTTTTATTGACTTCTTAAGACATTTCGCCAGATACAAGACCTCGGGAAACTGCCTTCTTATATTTGACGGGGCAAAGTGTCATTTAGATTACAGAATTGCTGAAGAAGCGGATATACTTGGTATCACTCTATACTGTCTACCCTCAAATACGACCCATGAATTGCAACCGCTGGATAAAGCCTGCTACAAACCTTTCGAGAGTTACTGGGATCAAGAAGTTCTTCAACATTTTTACAAAACCCATGCACAAAAATTAACTCGCCCAGATTTTAATAAGATTTTATCGAAGATTTGGTCAAAATGTATGACACATGAAAACATCACTAGTGGCTTCCGAGCAACAGGGTTATATCCCTTTAATCCAGATGTTTTGCCTGAAAGCGCTTTCGCACCCTCAGTGTTAACGGAACTACAGGCACCTATAAGTGAAGACAGAAGTGAATCTTGCGATATGTTTCCAATGGCAGATAACAATGAAGAGCTCGAAAGTTTGGTGAATGTTCGGCAGGCAACCCCTACTACTGCATACGTAACACAAGACATCTCACTCTCACCATCTCTAATTGAAAGTTTGAACACTCTACAAGACATTCCACCGCGTGCACTGATTGAGTGTCCATCTCCAAATGTCACTCCACCGCGTTCAACAGTTGTTTGGCGCGCTCCAGAACACACTCCACAGCATTCTATTATTATGAGTCCAACTCCACGAGTTACTTCTCCAGACTCACACATCAAACCACATTCTTCAAGTCAAACCTGTTACAGATCGCCGGTTGCTTCTACAAGTGGCTTGCAAAATTTAAAGAGACTTTTATGTTATAGCTCATCTACTGATGCTACCGACTCTGATCATACTTCTGACAACGAAATGATTACCAAATTTATCACAAGACCACTTATTCAACAATGCAAATATGCTTCTGATGGTGAAGATAGTTCCGACAGTGAAATTATGACAAGGTTCATCACAAGATCACGTAAAGAGCAATCGTTACGTATTTATTCATCTGACTCGGATTCTGAAGCAAATCTTGAAGACGACGACGTACCGTTGGCTCAGTTATCGCAAAAATCGCAGTTTCAACAATTTATGCCCACACCAAACTATGCAATCACCAAAAAAAGACCCCGTCGAAAGGCTTTGAATTACAAAGGCCAAAGAATAAGTAAAAATCTATTTAATGACCCGAAAGACATAAAAAAGAAAGCGGATAAAAGTGAAGTAGCCAAACTAGCCAAAGGTAAAACTAAACCAAAAGAAATAAAAAAGAAGGCTGACGATAAAGACAAAACAGCTAACAAGAGGAAATTAGGAGAGCACAATGTTATAAAACCAAAGAAGCAAAAAAAAGAGATTATAGCACATACTAGTGGGGAAAAAAAAGAACTCAGCAAAAAGAAGGGTAAAGAAAACAAAAGTGGGGAATGGTATTGTTACGCTTGTTATGAGGATCGTATTGCCGACATGAGATCATGTATGAATTGTACAAAATGGTACCACGAGGAGTGTATCGGTTTAACAAAAAAAGACAGAGAAGAATTTAGATGTCCTGATGGCTGTGATTAA
Protein Sequence
MLRNERQLRKANVKSAASTLYHPSARASSPHTRRTRPPARPHAGSTTTIPNKILKPKLELEQRFEKLILAKRFKRIDSTSPPLVDWSYVPTLVLAVILVLVAATALAARAADGKQSTRLPGPQALPFLGTRWLFWSRYKMNQLHEAYEDMFRRYGPVFVETMPGGASVVSIAERAALEAVLRAPAKRPYRPPTEIVQVYRRSRPDRYASTGLVNELQNMSTAKKKRASWTQSDLEAAVTAVQTNSLSSYKAASSYNIPRRTLRDYLKSGMSKLNLGRRSIFTSEQEQDFVKRIIRFADLGIPLTPKMIRKQAFVFCEAYNITNNFNKQLGIAGRDWLKLFLKRNSNVAKRKAQFLNQARGQKLNKAIVSHHFKEVEKLYDESGIRYNPERLYNMDEKGCRLTMHKQPTVIAQKGAKRVHLQASEHGENVTIVGCANALGNSIPPMIIFKGVRRKPEFELNLPPGSTVRMAPKGSMTSELFIDFLRHFARYKTSGNCLLIFDGAKCHLDYRIAEEADILGITLYCLPSNTTHELQPLDKACYKPFESYWDQEVLQHFYKTHAQKLTRPDFNKILSKIWSKCMTHENITSGFRATGLYPFNPDVLPESAFAPSVLTELQAPISEDRSESCDMFPMADNNEELESLVNVRQATPTTAYVTQDISLSPSLIESLNTLQDIPPRALIECPSPNVTPPRSTVVWRAPEHTPQHSIIMSPTPRVTSPDSHIKPHSSSQTCYRSPVASTSGLQNLKRLLCYSSSTDATDSDHTSDNEMITKFITRPLIQQCKYASDGEDSSDSEIMTRFITRSRKEQSLRIYSSDSDSEANLEDDDVPLAQLSQKSQFQQFMPTPNYAITKKRPRRKALNYKGQRISKNLFNDPKDIKKKADKSEVAKLAKGKTKPKEIKKKADDKDKTANKRKLGEHNVIKPKKQKKEIIAHTSGEKKELSKKKGKENKSGEWYCYACYEDRIADMRSCMNCTKWYHEECIGLTKKDREEFRCPDGCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-