Doo034322.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411730.1:27556215-27557261[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 4.5e-07 30.5 0.0 4 39 14 49 12 54 0.91 2 2 6.6 2.1e+03 -0.4 0.0 19 34 170 185 161 193 0.70
Sequence Information
- Coding Sequence
- ATGGCTACAAAACGAAAATATTATGCGTGGAATGAAGTAAGCATGAACCTAGCCATTGAATCAGTGCGTAAAAATAAAGCAGGTTTGAATGAGGCAAGTAGGATGTATGGAGTGCCTAAAGCCACACTAAAACGAAGATTGGATGGTGTGAATGAAAAGGCTAAGGAACATGTTCAAATAGTAGGATCTGAAggtgatcttccgtcagaattggaaaccgaattatgtcaacacatcctcgagatggaaagtagtttgtatggtgtaacgcctttcgatattcggcagctggcatttgaactggcagaaaagaacaatatcaaaaatcgatttaacaaagagaaaagaattgcaggtaaaaaatggtactatgcgttcatgaagcggcatccacaattaagtttgagacaaccaagagcaacttcaatgagccgggctactggatttaacaaacctgctgtaaccgatttcttcaataaattagaggcagtatgcgaaaaatacaacataacagaagcgcagcgtatcttcaacgttgatgagacgggcttgtcaactgtccagaggaaaacaagaaaaatactggcattaaaaggtaagcggcaagttggagctattactagtggagaacgcggtacaaatactacagccgtatgttgtgctaatgctgctggtaattttataccaccgcttataatatttaagcgcaagagagcaaaagacgaactcagggatggagctccacctggtacaatatttgcttttaatccagagagtggatatattaacaaagacatattttatttgtggttacaacactttattgagtctgtgaagccgacacctgaaaaaaaagtattacttctgttagatggtcatgctagccatacaaaaaatttaaaagctataacatatgccaagcaacacggcgtcgtattgctttcatttccagcacatacaacacataaaatgcaaccgctggatgtctccttcttcaagccgttgagcctttactatatagatgaaacagaaaaatggttgcgctaa
- Protein Sequence
- MATKRKYYAWNEVSMNLAIESVRKNKAGLNEASRMYGVPKATLKRRLDGVNEKAKEHVQIVGSEGDLPSELETELCQHILEMESSLYGVTPFDIRQLAFELAEKNNIKNRFNKEKRIAGKKWYYAFMKRHPQLSLRQPRATSMSRATGFNKPAVTDFFNKLEAVCEKYNITEAQRIFNVDETGLSTVQRKTRKILALKGKRQVGAITSGERGTNTTAVCCANAAGNFIPPLIIFKRKRAKDELRDGAPPGTIFAFNPESGYINKDIFYLWLQHFIESVKPTPEKKVLLLLDGHASHTKNLKAITYAKQHGVVLLSFPAHTTHKMQPLDVSFFKPLSLYYIDETEKWLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356101; iTF_00172745; iTF_01527000; iTF_00685359; iTF_01342142;
- 90% Identity
- -
- 80% Identity
- -