Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.8e-07 0.012 16.4 11.8 1 19 26 48 26 48 0.89

2 11 1.8 2.7e+04 -4.0 0.9 1 4 57 59 57 60 0.79

3 11 0.83 1.2e+04 -2.9 2.2 6 10 78 82 78 82 0.94

4 11 0.0039 59 4.5 7.8 1 11 88 98 88 99 0.93

5 11 0.01 1.5e+02 3.2 0.6 4 10 103 109 102 109 0.92

6 11 9.4e-07 0.014 16.1 15.0 3 19 117 133 115 133 0.92

7 11 1.1 1.7e+04 -3.3 0.3 16 18 167 172 165 173 0.52

8 11 0.00016 2.4 8.9 9.6 9 18 179 188 177 189 0.92

9 11 0.24 3.6e+03 -1.2 1.3 8 13 194 199 193 200 0.79

10 11 1 1.5e+04 -3.1 0.8 15 18 215 219 214 220 0.54

11 11 1.1e-09 1.7e-05 25.5 10.2 1 16 225 240 225 241 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.8e-07	0.012	16.4	11.8	1	19	26	48	26	48	0.89
2	11	1.8	2.7e+04	-4.0	0.9	1	4	57	59	57	60	0.79
3	11	0.83	1.2e+04	-2.9	2.2	6	10	78	82	78	82	0.94
4	11	0.0039	59	4.5	7.8	1	11	88	98	88	99	0.93
5	11	0.01	1.5e+02	3.2	0.6	4	10	103	109	102	109	0.92
6	11	9.4e-07	0.014	16.1	15.0	3	19	117	133	115	133	0.92
7	11	1.1	1.7e+04	-3.3	0.3	16	18	167	172	165	173	0.52
8	11	0.00016	2.4	8.9	9.6	9	18	179	188	177	189	0.92
9	11	0.24	3.6e+03	-1.2	1.3	8	13	194	199	193	200	0.79
10	11	1	1.5e+04	-3.1	0.8	15	18	215	219	214	220	0.54
11	11	1.1e-09	1.7e-05	25.5	10.2	1	16	225	240	225	241	0.96

Coding Sequence: TTAGCGGAAGGATCCCGCAAATCGTGCACAGATACGATACCACTGTGTGGCAACATCTGTGCCAAGCCTCTGCCGTGTGGACCGGCCGGTGACAGGCATTTCTGCAAGCAAGACTGTCACGAAGGCGAATGTCCCGTGTGTCCTGATAAGACGCTAGTGCAGTGCCGTTGTGGACATTCCAGTCGCGAGGTGCCTTGCTCAAAATTACCGGAAACATACAACAATGTCTTCTGCCAGAAGAAATGCAATAAGAAACTGTCGTGCGGTCGTCACCGTTGCCGTACGTCATGTTGCGCGGCGACGTCGCACCGCTGCGCCGTAGTGTGTGGACGCACGCTCTCGTGTCAGACGCATCGCTGCGAGGAGTTCTGTCACACCGGACACTGCGCGCCCTGCCCCAGGCTAGGTTTCGAGGAGCTTCGGTGCGCGTGCGGCGAGCAGGCCCTCCTGCCTCCGGTGCCGTGCGGCGCGCGTCCGCCCGCGTGCTCGGCCGACTGCCGACTGACGCGCCCCTGCCGGCATCCCCCCCACCACGCCTGCCACCAGGGCGACTGCCCGCCCTGCGTGGTGCTCACCACCAAGCGATGCCACGGCGGACACGAGGAAAGAAAGACTATACCGTGCTCCCAAGAAGAATTTTCATGCGGTCTACCATGCGGCAAACCATTGCCGTGCGGTAAACACACTTGTATCAAAACATGCCATAAGGGTCCCTGCGATACAGGAAAGTGA
Protein Sequence: LAEGSRKSCTDTIPLCGNICAKPLPCGPAGDRHFCKQDCHEGECPVCPDKTLVQCRCGHSSREVPCSKLPETYNNVFCQKKCNKKLSCGRHRCRTSCCAATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRLGFEELRCACGEQALLPPVPCGARPPACSADCRLTRPCRHPPHHACHQGDCPPCVVLTTKRCHGGHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGK

Sequence clustering based on sequence similarity using MMseqs2