Dsac002814.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010004352.1:281-19055[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.3 27 6.2 0.2 2 21 1482 1501 1481 1502 0.87 2 7 0.00025 0.022 15.9 1.6 3 23 1613 1633 1612 1633 0.97 3 7 0.014 1.3 10.4 6.0 1 23 1653 1675 1653 1675 0.97 4 7 0.005 0.45 11.8 4.2 1 23 1715 1737 1715 1737 0.98 5 7 0.0055 0.49 11.7 5.1 2 23 1761 1782 1761 1782 0.95 6 7 0.0047 0.42 11.9 0.3 1 20 1804 1823 1804 1825 0.94 7 7 0.55 49 5.4 0.8 5 23 2177 2196 2174 2196 0.90
Sequence Information
- Coding Sequence
- ATGGATAGGTTGAATCAGTTGCGAGGCGAAGCGGGGACTTCGCGAGATTCCACGCTCGACACTACGTCTCCACCGAGCGAAGCTTACATGACAGCCAACGAGAGTTCATCAAAATATTTCTCTCTGTCAGAAGTGGACACCACATTTGATATTTCTCCAATAAAAGATGTGTCTTCCACTGTCGACACAGAGAGTACAATAAGCGAACCAGACAGACTGATATCGAATTTGTCTCCAATAGGAAAGAAAAATGACTTCCTAGATAGCTACAAAATCGGTAAACAAATAGAAGCTGCTAATATTTTGTCTGGTGGTGTGGATATATTTGATGATAATGATAATTCTTATGATGGTGATGAACTTGTTATTGATGATAATGTTGAAGGTGAGGAGAAATGCATCCCAGAAATTAAACTGCCCGAGTCTAAAATCAAGCAAGACAACCCTATTGAAGCAAGTCTTGTTGAGTCCGAGCCGATGCCCAAAAAAGGTTCAACTGAAACAACTATTCAAGTAGATGGAAAGAATGTTGAAGCTATTGATATCGGCAATGGTTTATATTTGTACAGAAAGGAGGGTGAAGCGGAACTTTCTGCTGTTCAGATTGTTGAAGGTCAACAACAATCAGACTTTAAGTTTCTGAAAGTACGTGAAAATGATGAAGGAAACTTAGAAGTCTATGAGGAAATCCATATTGAGGTCCCCAAAGAAGTGCCTGCTCAAGAAGGAAGCTCTAGCGATGCAACTTTGCCCCAAGTACCTATTAGAGATATAAATGATGTTACGAATAACATAGTGACAGAACGACAAAATGAACATGAAACTTTGCCAACTGCAAGTAATTTAAACAGTGAATCTAATAAAGACAATGTTGATTTGAAATTGGAAACCACTGGAAAAGTTATGAAAATTTGTGAGTCACGTAAATCCCCAGTTGTGGGCAGTTATACATCAATGACATATCATTCAACACCAAATAAAGAGGGTATTCCTCTTACTAAAACAATGGTAGATTTGCAGCTTCAACCCAATAGACATTCTGATAATGTTAAGAAAACCATTGAAGTTCATACTGATAGTGTTAAACCTAAAGTTAATAAAATTATAAAAGAAAATGATGACAAAATTATCAAATCTGACAAGAAAGCAAATGATACAGATCAAAAGGAAGAATCAATAACTAAACAGACAGATACAGAGCAAAAACAGAAAACTTTAGAAAATACAAATAGTAATGAAAATATCATAATACTTGAAAGAGCAGATAAAGAGAAGCTAATGAATGAACATACAGAAATGGAAAAAACGAAAAAAGAAGAGTCCTGTAAATCAGATAAACCTGGAAATTTAAATAAACCTGATGTGAGTGAGAGCACGGAAGATAAACCAAAAAGAATTGATCACACATCACAGTCTATTCTTGACACTTCAAAACATGATGTGGATGGACAAGCTGTTGAAACAAAATCAAATGACAAGTTAAATTTTGAAGAAAATTTGAGAAAAACAGAATCGATATCAACTGACAGTGAGATAAAGGAAATGAATGAAAATCAATTCAAGAATGAAGAAAAAGTTACGAGTAGTACAATTCACCATTCAGAAAGTGTTCTTGATACTAATAATAAAATTGAAAATCAAAGCTTGAGTGGAGCAATAATTTCTACAACCAATGATAGCGAAAAATACAAGATAGAGACTACTGATGAGATAGTTAAAGAATCTGACAATGTTACAAAATCACAACATTTAACTGATTTTTCCACCAACAATCAGAGTAATCAAAAGTCTACTAAAGAAAATGTTACTATCAATTCAACAAGTCTAAAAGATACATCCAGTTCTGCAAAGATTGAAATGAAAAATAAAATTCAAAATCTTGAAAATAAATTAGATCAACCAGATATACAAACAAAAACAAGTGTTTCTGGTAACAGCAACAAAGATAACATCTCAACAATAAACATGAAACCAAAATTTGATATTAATAAAAGCCAGAATGTTCTCAAAACTACAGATACTAAACATTTTAAATTAGAAAAGAACATAAATGCACAAATTCCAAATGTGTATTCATTATCCACAGAAACTAAAGAAAGTCTTAGCATGGATTCGACTGTAATTAAAGAAGCGGAAAATAAAATATTAGTATCTAGTGAAATATCTCCAAAAGTGCAGACTTCTATTTTCGACCATAATAATAAAAAAGAACCCAATAATAAAGATTCTAAGTCTGTATTGGATAAAGCAACCATTCTAAACAAAGATATAGAAATAATTAAAAAGACGCTGCCTGAAGTCAGTACAATAACAGAGCAGAAACCTGCTAGCACAAATCATGTAGCTGTTCCTTTCGGCAAATGGACAGAAGTTAATAGGCAGGCTTTTCTGAATAAAATCAAAGAAACGAAAGTGCCTTCAAATAGTTCGAATGGAAAACAAATAAAGAACTCCAATGATTTGAATCGTAGAGATGTTTTAAAAAAAATTGACAGTCATAGACAAACTCATACTATTGCAGCATCGGCCAAAGTACAAGATTTTGGATGTAGTAATAGATTGCCTATAAAAAAGGAAGCGTCAGTGTTCTCCAGTAAATCAGTGACACAAGATATCAAAGTTCCTGTAAAATCTGAAATAACATTACTAAAATCCAATCCTGTTATTGCCAAAAAGATTGTCAAACAAGAGCCAATTCCCAAATTACAAAACACTTCAACAAGTGTAACAAACGAATCTACTACTAAAAAAGAGCCATCTCAAAGAAAAGAAATAAACAATCAAGATTTGATTGACAAGACAATTGAAGACATAATTAATAGAGCTGTACCTGTTAAATCTCCACCAGATAATAATCAGGATGTTATGAATGAAACTTTGGATGCCTTACAAAACAAAGAAAAATTCGATGAAATTGAAAAGAGAATGAACGAGTTACACGGTTTTGCATGCGTTGTACCACCTGATGGTACTGGCGCTCACCGTGGCGATCAGAAAATGTTCATCAAAACTGATAGTCAAAAATTGTCATCTAATAAGCAGAGTAAAATACCCAACCTCCTTCCTTTCAGTAACAAAAATCAACGAAAAGGTGTGAAAGAAAATATAGATATTGACTCTGAAGATGAAATTATTGAACATGAACCAATAACTGGTGACATGGATTTAAATAAGAAGAATATTACTAAATTACCTATTTCTGATAATCAGGAAATTACTGCTCAAACAACTATCCTTGACACTCAGAAAGATACTATTATTACAGAGAAAGACTTTGATAAATTCGTTAGACGAAATTCTATTAGTTATGAAAACTGTATAACTGTTAATTTTGATAGCAAAGAAACACATAACGTAGTGCAGACAGTGGTACAGAAAGAAAGTGTTTTGAAAACTTATTCAAAACATGATTTTCTGCACCATGGTAACAAACCAGCATCTATAAAGCACGAGACACACAAATCAAGTACTCATTCAAACCAAAATACATCTAAAATTAGAATTATACACAATGAAGAAATAATGAATAAAAATTACCATTCTAAGGTGAATATGGCCTACCAAAATGCTATAACTGCTAAACGTCAATCGGAACGTCCTATTACTATAATAGAAGACAAACCTGTAAAGGTTGTGTTTATGGATAGTGGTGCTGAATTTATCCCAAAAAAATTAAATGCCTATGGTAAAGATTTATCGCCAGCAAAAAGTCAATCCTCTAGTATTGAAGGAAATGCGATTAGTACTAGCGCAGATTTACTTGATTCGGATACCTTCGATTCGATGGATGATGGAAAGTCTCAAGATGAGATTAAATTAAAAACGAAACATCAAAGAAAACAAGTTTTAACACCGGTAGAAACACCTGAGTTAGAACTAATTGAACCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGAAAACAGAAGAAAAAGTAGAGAAGAGCCCAAAAGCTGTGGTACCTAAAAAATCATATTTATTGGGACGGGGGGCTATATCGGAAGATACAGTTTCTAAACCGTACGATCTCACCAATGTGTTTGAAAAAGATAATATAAAAGTCGAAAACATCCACGTAACACATAAAAATACAGCGTCACTGATTGACAATCTTGTAAAAGCTGCAGAATTGTTAGAAACTCAATCAGAAAATTTAAATACAACGATTGCAATTCAGAATTGTGATAATCAGCAAATGACACCTATTAAAAGAGGAAGGGGTCGTCCTAGAAAATACCCTCAAACAGACGGCACTGTTGATAAAAGTAAAGCTCCCTCCCCGCAAAAGAAACCCAAGCTTTCAGATATAAAATCAACAAAAAGAATTGATACAGATGATGATATTTATGGTGATGTAGATGACGATGAAGACGAAAACAGTGATGGAGAGATAATAAGAGAAAATTGGACAATGGGAAAAATTAACGAAAATATAGTTTGTCCCATTTGTAACAAACTATTCCGTTCAGAAAACGTAGTTTTTAAGCATGTTAAACATTGTACTGGACCTTCTCCAAATAGATCTGATTCTGGAAGTAAAAGTCCAAGAAGATTTAGGGAATCACAAGATTGTGAATCAAAATTAACTAATAACAAATTACATGAAATGGATATAGATGATAACGAAAATTCCCAGCAAGAAATAAGAAATAAAAGGAAGTCAAGAGATACAAATCCAAAATCGATGGCTAACAAGGAAGAAATTATTATAATTACAGATACTCCATCAAAGTTGAAATCTGAAAAATTTGAAGGTGTGAAACACACAGTATCCAAGAAATCCACTATTATCAAAAACAAATCGTCTGATAAAGTAAACAATCTGCTATGTAAATTTTGCGGCAAAACTTTTAGACAACTGTCTTACTTGGTTAATCACAAATTGCAACATGAAATGAGTGACTCAAAGAAACATGAATCTGATAAAATGAAGACAGTTAAATCTGTATTCAGTTGCGAAGTTTGTAAGAAACAATTTCGGAAATTACATCATTTGGTACAACATCGTTTTATTCACAATACTTCTACTGCTCCATCTACAAAAATATCTAGGAAAAGCTCTGCTGAGCACAATGACCATAGAGCGCCGAAAGATCAGAATGTACCTAAGCAAGGTGACGATGCCAGTGCTGGTTTTCGTTGTGAACCTTGCGACAAATCATTTAGAAAATTACATCATTTAGTAGAACACAGAGAAACTCATGATGGCATAAATAGACAAAAGAACACTACAAATGTGCTAGCACCAACGGACAAAGTTCCACCACCTCCACAATGTGAAATATGTAAGAAAACCTTCAGAAAACTACATCATTTAATTGAACACAAAGAACAACATATAGAAACGAGTTCAGAAAAATCTGATGATGTTAAGAGTTCTCTGTCTACTAAAGACATTATTCATGAATGCCCACTTTGTTACATGGTATTCCCTAATGAGCATTCATTAAATAAACATACAATTATTTGCCAAAGGAAGAAACGACAGTCTGCTTCGAAACAAAATAGGCCAACAGAGGAATTAGAAAATATTGACGATAATAATTTAATCGCTCATTCCAATGAAGAATTACAGAAAAGTAATGATGTTATAATTGTATCAGCTGAAATCGTAACTAGTAAGAAAGATATTCAAAGTGAGCGACTGGAAGAACCTTTAAAGAAGGACATAGATAAACATGATAATGTAAATTCTACAATAGCTAATGTGGTTAATGTATCTGAATCACTAAAACATAACATCACAATTGATAAACCAAAGGAACTCGCTATTGAAGTTACTGATATTCCTGAACAAGAAGTTATTAAAACCAGTAGTTCTATCAAACCAGATGCAATTTATAACAAACCAGAGATAAAAGAGCCAATCAAGAATCAAGAAACTCCAAAGAAAAAAGCGTTTTTCAAAGAGAAAATTACTTCAACTATTACAAAACGGCACAAACCGAATCTCCCATTACCCATTGTTGAATCTAGAGAAACAACTGACGACGATGATGATGAAATAAGATACATGCTGAACCCTGATTACAAATTGGATGATAATAATGAAGGGAAATTATTCATGAAGGTTAGAGCTAAAAAACGTAATTCGTTGCAAATCGAACGGCCTAACTCGAAAGATCTAGTCAAAAGACGAATATCCCTTCAACACCCACCTAAACTACCTCGTTTGAAACCCAAAACGATTCAAAGTAAAACAATGCCTACTAAGGCATTGACTAAAAATGTTACCAAAGCTGCTAACTTAGATACAGACCATTTCACGGATTCGGACGATAGCGAAATTAAATATTCATTTCCAAAAATTGTTCCTGATAAAGTCGCAAAGTCAAATGTCGAAGCATCTATAGAAACAAATAAGAAAATGCAAAGAAAATCTTTAACAGAAAAAAGAAAGTCACTTAGTAGCATAGCTAAAAGGAAATCACTTGGAAAGACTATGGCAGGGAAGCACAAACCGAAACCTTCTCCATTGAACCCAATTAAAAAACGGATCGCACAAGTGGAACACAGATGCGACTGCGGTCAGTTGTTCAGTAGCGCGGCGTTGTTATCGCGACATACTACGCTCGCTCATACGCCGCCGAGGATACGTCGCCGACGTCGATCGCCTTCGCCCGATAACATAACTATCCCCAAACAAATGAGCCAAACGAAATCCACTGCTATCCCTAAGCCTCAGGTAAGTGCTTCTAGAAAGTCCAGCGATACATCCCGGCAAACGGCGATCAGGAAGTCGAACGGCCAAAAAGCAGAACTCAAAACGCCAGATGCTAGAAAATCTCTAAAATCTAACGAGTCCCCTAAAAGCGGCGCGACGATAACGAAAATGAGAAGGTATACTGCGCACAAGGGTGTACCCGTCCCGGATAAAATGAAGAAACTCATGGAGAAGTCTAAAAAGTAA
- Protein Sequence
- MDRLNQLRGEAGTSRDSTLDTTSPPSEAYMTANESSSKYFSLSEVDTTFDISPIKDVSSTVDTESTISEPDRLISNLSPIGKKNDFLDSYKIGKQIEAANILSGGVDIFDDNDNSYDGDELVIDDNVEGEEKCIPEIKLPESKIKQDNPIEASLVESEPMPKKGSTETTIQVDGKNVEAIDIGNGLYLYRKEGEAELSAVQIVEGQQQSDFKFLKVRENDEGNLEVYEEIHIEVPKEVPAQEGSSSDATLPQVPIRDINDVTNNIVTERQNEHETLPTASNLNSESNKDNVDLKLETTGKVMKICESRKSPVVGSYTSMTYHSTPNKEGIPLTKTMVDLQLQPNRHSDNVKKTIEVHTDSVKPKVNKIIKENDDKIIKSDKKANDTDQKEESITKQTDTEQKQKTLENTNSNENIIILERADKEKLMNEHTEMEKTKKEESCKSDKPGNLNKPDVSESTEDKPKRIDHTSQSILDTSKHDVDGQAVETKSNDKLNFEENLRKTESISTDSEIKEMNENQFKNEEKVTSSTIHHSESVLDTNNKIENQSLSGAIISTTNDSEKYKIETTDEIVKESDNVTKSQHLTDFSTNNQSNQKSTKENVTINSTSLKDTSSSAKIEMKNKIQNLENKLDQPDIQTKTSVSGNSNKDNISTINMKPKFDINKSQNVLKTTDTKHFKLEKNINAQIPNVYSLSTETKESLSMDSTVIKEAENKILVSSEISPKVQTSIFDHNNKKEPNNKDSKSVLDKATILNKDIEIIKKTLPEVSTITEQKPASTNHVAVPFGKWTEVNRQAFLNKIKETKVPSNSSNGKQIKNSNDLNRRDVLKKIDSHRQTHTIAASAKVQDFGCSNRLPIKKEASVFSSKSVTQDIKVPVKSEITLLKSNPVIAKKIVKQEPIPKLQNTSTSVTNESTTKKEPSQRKEINNQDLIDKTIEDIINRAVPVKSPPDNNQDVMNETLDALQNKEKFDEIEKRMNELHGFACVVPPDGTGAHRGDQKMFIKTDSQKLSSNKQSKIPNLLPFSNKNQRKGVKENIDIDSEDEIIEHEPITGDMDLNKKNITKLPISDNQEITAQTTILDTQKDTIITEKDFDKFVRRNSISYENCITVNFDSKETHNVVQTVVQKESVLKTYSKHDFLHHGNKPASIKHETHKSSTHSNQNTSKIRIIHNEEIMNKNYHSKVNMAYQNAITAKRQSERPITIIEDKPVKVVFMDSGAEFIPKKLNAYGKDLSPAKSQSSSIEGNAISTSADLLDSDTFDSMDDGKSQDEIKLKTKHQRKQVLTPVETPELELIEPRXXXXXXXXXXXRKTEEKVEKSPKAVVPKKSYLLGRGAISEDTVSKPYDLTNVFEKDNIKVENIHVTHKNTASLIDNLVKAAELLETQSENLNTTIAIQNCDNQQMTPIKRGRGRPRKYPQTDGTVDKSKAPSPQKKPKLSDIKSTKRIDTDDDIYGDVDDDEDENSDGEIIRENWTMGKINENIVCPICNKLFRSENVVFKHVKHCTGPSPNRSDSGSKSPRRFRESQDCESKLTNNKLHEMDIDDNENSQQEIRNKRKSRDTNPKSMANKEEIIIITDTPSKLKSEKFEGVKHTVSKKSTIIKNKSSDKVNNLLCKFCGKTFRQLSYLVNHKLQHEMSDSKKHESDKMKTVKSVFSCEVCKKQFRKLHHLVQHRFIHNTSTAPSTKISRKSSAEHNDHRAPKDQNVPKQGDDASAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKNTTNVLAPTDKVPPPPQCEICKKTFRKLHHLIEHKEQHIETSSEKSDDVKSSLSTKDIIHECPLCYMVFPNEHSLNKHTIICQRKKRQSASKQNRPTEELENIDDNNLIAHSNEELQKSNDVIIVSAEIVTSKKDIQSERLEEPLKKDIDKHDNVNSTIANVVNVSESLKHNITIDKPKELAIEVTDIPEQEVIKTSSSIKPDAIYNKPEIKEPIKNQETPKKKAFFKEKITSTITKRHKPNLPLPIVESRETTDDDDDEIRYMLNPDYKLDDNNEGKLFMKVRAKKRNSLQIERPNSKDLVKRRISLQHPPKLPRLKPKTIQSKTMPTKALTKNVTKAANLDTDHFTDSDDSEIKYSFPKIVPDKVAKSNVEASIETNKKMQRKSLTEKRKSLSSIAKRKSLGKTMAGKHKPKPSPLNPIKKRIAQVEHRCDCGQLFSSAALLSRHTTLAHTPPRIRRRRRSPSPDNITIPKQMSQTKSTAIPKPQVSASRKSSDTSRQTAIRKSNGQKAELKTPDARKSLKSNESPKSGATITKMRRYTAHKGVPVPDKMKKLMEKSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -