Basic Information

Insect: Diatraea saccharalis
Gene Symbol: ci
Assembly: GCA_014843785.1
Location: JACGTY010005832.1:194-15766[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00046 0.041 15.1 0.4 3 23 267 290 265 290 0.95

2 5 0.19 17 6.8 0.1 3 23 300 325 298 325 0.79

3 5 0.025 2.2 9.6 5.0 1 23 331 355 331 355 0.97

4 5 0.0017 0.16 13.2 0.2 1 23 361 386 361 386 0.97

5 5 9.7e-06 0.00086 20.3 0.3 1 23 392 417 392 417 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00046	0.041	15.1	0.4	3	23	267	290	265	290	0.95
2	5	0.19	17	6.8	0.1	3	23	300	325	298	325	0.79
3	5	0.025	2.2	9.6	5.0	1	23	331	355	331	355	0.97
4	5	0.0017	0.16	13.2	0.2	1	23	361	386	361	386	0.97
5	5	9.7e-06	0.00086	20.3	0.3	1	23	392	417	392	417	0.97

Sequence Information

Coding Sequence: ATGCCTTCCGAAGGACAGAGCTTAGAGTATTTGAGTGCTGCGAGAAGTCTCCATCCTGAATTGCATGCTGGCAGTACCTTAGCCAGCCAAGATTTCCAACTTAGTTTAGAAGGATCTAGAATCGCCTCACCAACTCGGCTAAGGTTATCGGGCGGGGCGATAGGTGCATCAGCCAACCGCAAGAGGGCGGTATCCTGGAGCCCTTACTCAGCAGAGTCCTTAGATCTAGCAGCAGTCATAAGGGCGTCTCCCGCCAGCTTAGCTGTGAGGGCGCCATCAGCTGCATCTACAGGCAGCTATGGACATCTCAGTGCTGGTGCTATATCACCAGCACTATCCCTTTCGCATGCGTCACTCGCGCAGCAATTGCTAGCTCGAGGAGGCGTAGTAGGAGGAAGTGGTGTTTTGGCTGGTGGGGTGTTGATGGATCCAGCACATCAACAAGCGGCGGCAGCGGCAGCACATCACGCGGCGCACGCGCATCTAGTTGCTGGAATTCATAGATCTCACATATCATCCCCGACGCAGCTGATAATGGGTGCCCCAGTAGATGTCAGACCGGGGTTGGGACTGGATGGTACTCCACCTCAACACTTACAGCAACCTTCTCAGCAGCCTGAAATCACTAGCATTATGGAAGCTGATAGTGCATCACACATTACGCAGCGAAAATCCCCACCGAGTTTAATGCAGAGGGACAACCATCACAGTAACAAACCCCTGTCCGCCGCTGCTGAGAGCACCGTACACGATGGTCTTGACTCTAAGGATGAGCCAGGAGACTTTATCGAAACCAACTGCCACTGGGTTGATTGTAAGCTAGAATTTCCGACGCAAGATGACTTGGTGAAGCATATCAACACGGATCACATACATGCCAGCAAGAAAGCGTTCGTGTGCCGCTGGGTGGGCTGCTCTAGAGACGAAAAACCATTCAAAGCTCAGTACATGCTGGTGGTTCACATGAGGCGGCATACCGGAGAGAAGCCTCATAAGTGCACGTTCGAAGGATGTTGTAAAGCGTACTCCAGATTGGAAAACCTGAAGACCCACCTGAGAAGCCATACCGGTGAAAAACCTTATACCTGCGAATACCCTGGTTGTGCTAAAGCTTTCTCTAATGCCAGTGATAGAGCTAAACACCAGAATAGAACACATAGCAATGAGAAACCTTACGTCTGTAAAGCACCTGGTTGCACAAAAAGATATACTGACCCCTCGTCACTTCGGAAACATGTGAAGACCGTTCACGGTGCTGAATTCTATGCAAGTAAGAAACACAAAGGTTGCAGTCGCGGTGATGACTCAGCGGAATCGGGTGGTGGAGGAGCAGGTTCTTCGCCGCGATCTGAAGAAGGCGGAGTCCCCATGGGAGTTAGAGGGCACACGTCATCAGCCTCCGTCAAGAGCGAGAGTCCTGCGTCACCACTGCCGCATGGTCTTCATACTCCTGCGCATCAGTTGTCAGCACAATGCGGAGGAGAGTTGGACTTTGGCGGTTCTGGTCTTGGTGGATTTAGTGACGAGAATGGTGTTCCATATTTTAGGATAGATGGCGAGGTGGAACAAGAGGTGGTTGGAGAAGTAGGACAATTGCCGCTCATGCTGCGAGCTATGGTTGCTATCGGGGAACCGCGGGCTCATCACCACGCCCCGCGATTCCAGAACAACAAGATGGGTCTTGGAAGACTCATGCCTCCAGGACACGGAGCTGATATAGGTGGAGGTGGTATTCCAGGACGAACAGAGCTCGGCAACACGAACGTAGCGGTTGAACTTAAAACTGGCGTACCAAACACGAGGCGAGATTCAGGAATATCTTCTGGGAGCAGTCTTTATAGTGCCAGGTCATCAGACATATCACGTAAAAGCAGTCAAGCATCAGTAGTATCTGGTGCAGTGCCGGGTGCAGTGAGTGGACCACCACGATTGGTCGCCCCTCACGCTGCGTACGATCAACTATCACCTGATAGTAGTAGAAGATCTAGTCAAGTCTCATGTGTTGGATATGCTCCTGCTCCTCCCTCAGCTCTTGCAGCTGTACAAGCGGTCAGGACATCTCAAGGCAATCAGGCGGTTCTGCTTCGTGGTGTTACTTGCTCGGAGGTGAGAGCAGAGGAGCTAGCTTTAGAACTGGACCCCAACATCCAGGTCAAAGAGGAAACCAGGAGACTTTCAGAACAGTCGAACTTGAGCGACCAAACCCAGGCGTATCAACCATATCCTTGCGGGGCTGACGATGTGGGTGATGCCTCATTTCCCTTCAAGACGGAAGATGATCACGATACGGTGACCTATAAGGAGTCCCGTTCGAATTCCACTAACACCGTGGTCACCACCGCCCAAGTTCACCATCCCAACCAAGAAGTAAACTTGGAACAGGTTGCAGAGGGTGAAATGGTGGAGAACAAGCTGGTAATACCAGACGAAATGATGCAATATCTTAACCAATCAATATTGGCAAACGAATCGGTAGCACCAGCTAACACCGACTCCACCAATGCACCAGAATCTGAGACGAACAAAGACAATAATGATGCTTTAACCAAAGACAATGCATCAAGTGAAATAGTTAACAACAACAACATCAGTGATAAAATTAGTGATGTAGCAACCAGTGACGATTCTCTACTCAAAAACCTAGGTGCCATAGGAAGTGATCTCAATATAAGTGATATTCCAGTTGATTTAAGATCGCTAGACGTTAGCATGTCGGGTAATAGTGGCTCTCTTCTAGCAACAAAATCACCAGATGATAAAAACCCTCTACAAGAGAAAGTTATACATGAGGTAAGCACAGAAAAATGTGAACAAGATTTCACAAAGCCGCCAACGTCTAATAACGTTAATAGTAATCCTTTGCAGTCTTTGCAAACTATGGCTGGGAATCAAACAGAACAATCAAACCAGATTAGAGTCAATTCATTACCTCAAAAACAGAAAATAATGAGCCCAAAGACTATGGTTATGAGTCCGCATAGTGTACGAAGTCCTCAGAATATAGCTCATAGTATGATGAGTCCACAAAGTCATCAGCATAGTACAATGAGCCCACAAAGTGTTGTGAGCCCACATAACATGCCTCATAGTGTAAGGAGCCCAGCTAGTGTTTACAATGTTATGAGTCCCCAAAGTGCCATGAGCGTCATGTCGCCGCAACATAATGCAATGTCTCCACAGAGCATGCAAAGCCTCATGAGTCCTCAAATGCCTAATCAGATAATGATGAGCCCACGCCATAATAACATTGGAAGCCCAATGTCACAAAATATTGCTATGGTCAACATGGCAAGTCCGGTGACACAAAATATTGCAAGTCCGATGAGTCATGGCATGCCAAGTCCTATGCATCCAGGCTTACAGAGTCCTATGTCCCAAGGAGTTGCGAGTCCAATGGTTCAAAACATTTCAAATATACAAATGAACTCACCGGTACAAAACCAAATGAATCCTAATCAAAACATCATTAGTTTGAACCAGCAACCACAAATGCAACCAGTTCAGCAGAATTACATGAACAACGGACAGAACTGTAACGCTAAAACTCCTAATCGAAATAACGTTCCCAATCAATACCAAAACCATAATTACAATCAAGCACCTCCTTACCCGATGCAAAATCAACAAAACGTAATTAATATAAGAAGTCAAAACATGCAACAATACCCAGTTATGCAGCAATATACACAAAATCAAATGCCTATGATGAATCAAATACCTCCTATCCAGCAAAATATTGCTTACAATAACCAGATGATGAACTACCAACAGGCAATGTATGCAAACCAAAGCAACCATATGCATCCAATGCAGATGTCTAGGTCTTCAATGATGAGTGTGGACAACAGCGGTAACATGAGTCGAGGTGCGATGAATAGCTATTGCGAGCCACAAAACGTTCAATATAATCAGAACACGCAATATCCTCAACCCCCTCCTTATAACTCTGTAGTCAACAACTCAGCAAGTGTCATGGGTCCACCGCCACCGAAAAATAACCATCAATATAACCAAGCTATGATGAATAACAACCAATATTATAATCATCAGAGACCTTATAATCAGTGGGATTATCCGGGAAATCAATTTAATAAGCACAATATGCAAAAGTGTGCTCAAGATTCTGTAAACATGTCCACTAGTAGTCAAAAACCTAACGGTGTAAGAGCTTCGATAAACTGCAATCAAATTGTAAAGAATATAGGTGAGCAGCAGACGGACTGTAGCATGAACAGTATGAGAGGACAAAATCAGCCAAGCGAGGTACAAGTTTGGGATATTTCCCAGTCGCAGATAGAAGCGACAAACGGCAGAAAGAAGAATCAAAACAGCATGCGTCAAGAAACCTATCAGAGGACTTTGGAGTACGTGGAGAATTGCGAAAACTGGAAGAGTTCTGAAATGGTTTCCAGTAGCACCCATCCGATGCAAGGAGGCGATAATATGGTGGTGAATGATCTCCAAACGTCACTGTCTTCTTTTTATGAAGAAAATCAGTACCTACAAATGATTCAGTAA
Protein Sequence: MPSEGQSLEYLSAARSLHPELHAGSTLASQDFQLSLEGSRIASPTRLRLSGGAIGASANRKRAVSWSPYSAESLDLAAVIRASPASLAVRAPSAASTGSYGHLSAGAISPALSLSHASLAQQLLARGGVVGGSGVLAGGVLMDPAHQQAAAAAAHHAAHAHLVAGIHRSHISSPTQLIMGAPVDVRPGLGLDGTPPQHLQQPSQQPEITSIMEADSASHITQRKSPPSLMQRDNHHSNKPLSAAAESTVHDGLDSKDEPGDFIETNCHWVDCKLEFPTQDDLVKHINTDHIHASKKAFVCRWVGCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCAKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYASKKHKGCSRGDDSAESGGGGAGSSPRSEEGGVPMGVRGHTSSASVKSESPASPLPHGLHTPAHQLSAQCGGELDFGGSGLGGFSDENGVPYFRIDGEVEQEVVGEVGQLPLMLRAMVAIGEPRAHHHAPRFQNNKMGLGRLMPPGHGADIGGGGIPGRTELGNTNVAVELKTGVPNTRRDSGISSGSSLYSARSSDISRKSSQASVVSGAVPGAVSGPPRLVAPHAAYDQLSPDSSRRSSQVSCVGYAPAPPSALAAVQAVRTSQGNQAVLLRGVTCSEVRAEELALELDPNIQVKEETRRLSEQSNLSDQTQAYQPYPCGADDVGDASFPFKTEDDHDTVTYKESRSNSTNTVVTTAQVHHPNQEVNLEQVAEGEMVENKLVIPDEMMQYLNQSILANESVAPANTDSTNAPESETNKDNNDALTKDNASSEIVNNNNISDKISDVATSDDSLLKNLGAIGSDLNISDIPVDLRSLDVSMSGNSGSLLATKSPDDKNPLQEKVIHEVSTEKCEQDFTKPPTSNNVNSNPLQSLQTMAGNQTEQSNQIRVNSLPQKQKIMSPKTMVMSPHSVRSPQNIAHSMMSPQSHQHSTMSPQSVVSPHNMPHSVRSPASVYNVMSPQSAMSVMSPQHNAMSPQSMQSLMSPQMPNQIMMSPRHNNIGSPMSQNIAMVNMASPVTQNIASPMSHGMPSPMHPGLQSPMSQGVASPMVQNISNIQMNSPVQNQMNPNQNIISLNQQPQMQPVQQNYMNNGQNCNAKTPNRNNVPNQYQNHNYNQAPPYPMQNQQNVINIRSQNMQQYPVMQQYTQNQMPMMNQIPPIQQNIAYNNQMMNYQQAMYANQSNHMHPMQMSRSSMMSVDNSGNMSRGAMNSYCEPQNVQYNQNTQYPQPPPYNSVVNNSASVMGPPPPKNNHQYNQAMMNNNQYYNHQRPYNQWDYPGNQFNKHNMQKCAQDSVNMSTSSQKPNGVRASINCNQIVKNIGEQQTDCSMNSMRGQNQPSEVQVWDISQSQIEATNGRKKNQNSMRQETYQRTLEYVENCENWKSSEMVSSSTHPMQGGDNMVVNDLQTSLSSFYEENQYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785604;
90% Identity: -
80% Identity: -