Basic Information

Insect: Diatraea saccharalis
Gene Symbol: ush
Assembly: GCA_014843785.1
Location: JACGTY010000008.1:12796-16328[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.007 0.63 11.3 0.2 1 20 108 127 108 129 0.94

2 9 8.7e-05 0.0077 17.3 0.9 1 23 167 189 167 189 0.98

3 9 0.068 6 8.2 0.3 3 20 220 237 219 239 0.93

4 9 0.043 3.9 8.8 4.2 2 21 478 497 477 498 0.95

5 9 0.0068 0.6 11.4 0.2 3 20 527 544 525 546 0.91

6 9 1.2 1.1e+02 4.3 0.0 2 23 574 595 573 595 0.94

7 9 0.0085 0.76 11.1 1.3 1 23 601 623 601 623 0.99

8 9 0.35 31 6.0 0.6 1 23 662 685 662 685 0.95

9 9 0.18 16 6.9 0.7 2 20 718 736 718 738 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.007	0.63	11.3	0.2	1	20	108	127	108	129	0.94
2	9	8.7e-05	0.0077	17.3	0.9	1	23	167	189	167	189	0.98
3	9	0.068	6	8.2	0.3	3	20	220	237	219	239	0.93
4	9	0.043	3.9	8.8	4.2	2	21	478	497	477	498	0.95
5	9	0.0068	0.6	11.4	0.2	3	20	527	544	525	546	0.91
6	9	1.2	1.1e+02	4.3	0.0	2	23	574	595	573	595	0.94
7	9	0.0085	0.76	11.1	1.3	1	23	601	623	601	623	0.99
8	9	0.35	31	6.0	0.6	1	23	662	685	662	685	0.95
9	9	0.18	16	6.9	0.7	2	20	718	736	718	738	0.92

Sequence Information

Coding Sequence: ATGGCGGTCGGTGAAGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCTGGAGAACCACGCACGCCGAGCTCAGGGGAACGAGCAGCATCAAGTGGGGGAGCTTCGCCGGCCTCGGGGGGATCACCCGAGGCGTCGCCGCCGCGGCTGCGGCTCAACACAAGTTTAGCTACGGATCCAGCGCTAGCACCTTCGGCTACGCCTCTGAAACATGAACCTCCTTCGCCGTCACCTCCACCGCCACCTGTACCGCAAACGAGAGACTTCCTAGCATTATCAGCTACATTTCCAGCGTTATTCCCGGCGGCCACAGCACCAGGATATATTTGTAAACCATGTGGCATCCGATACTCTTCATTGAGCACGCTACAAGCTCACCAAGAACACTACTGTTCAAATAGGAGGCCTAAAACCGCCGACGGATCTGATCCGCCTGCTGACCCTGCGGCAGACGAGTCGAGTAGTGATGCTAAAACGCCGCGCCCGTCTGGGAAACAATATGCGTGTACTTACTGCTCGTACAGTGCGGATAAAAAAGTCAGTTTAAATCGGCATATGCGGATGCATGCGTCGTCACCTGTCAGTAGTGGAACTCCCGCTCCTACACCAACATCCAACGGTGAAGTGACCGAAGGCCCACCGCCACAAGACCGTTACTGTGCCGACTGTGATATACGTTTCAGTTCAATAAAAACATACAGGGCTCATAAAGCTCACTACTGTAGCACTAGACAAGTTGTGAAACAAGCGCTGGCAGCGGTGAGAGCCGGATCGGTTACGTCAGAATCTGCACCACCTTCACCGGGTGCGACTCCTCCAGCTCAAGCTCAATATGCATTAGCTTTGCCAACTAACCCCATTCTTATAGTTCCTTACTCACTTTTACGAAACGCGAGTACTTTACCTGGAACAACTCTACCCGATCCCGACACGCCTTGTTTTTTGTTACCGAATGGAACATTCCAGCCCCTCAGCCGGGCTTTGCCAAATATGAACTCAGATGGGAAGGAAACAGAAGTTTTGAAATCAGCGAACAGGCCTCGTGAACCATCGAGAGACGCAGCCACCCCGCTTGATTTGAGTGTACGCCGTTCACCAGAGTCTGTGACTACAGACGAGCATGAGAAAGAAAACAGAATACGGTCAGCGACTCCTGAACAAATAGTGTGCGCGCCTTCTTTACCGGGATCACCTGGTACGCCGTCTCCATCGCACAGATCTTCATCTCCAAACGGAACTCCGCCACCTAAGAGACGACGGCAAAACTCTAGAGATCCCACCCCTAAGCCTCCCAGCATACCTTCACCACCTGAAGAGAAATTTAATCCAATAGTACCACCGTCTATGATAACGCCCGCGTTAGCGTTACGTCTCGCTAGTGAAATGCCAGTCACCGCGTCACCTCAAGTTTTAGTCAAACAAGGAGTCTCGAAATGCAAAGAATGCAACATCGTATTTTGCAAGTTTGAAAACTATCGTATCCATAAAAGACATTATTGTTCGTCTGGTGGGGGAGAAGAAAGAGCTAGTCCGGCACCGCCCGAGCCGGGACCTCCTCCGCAGTACCGTCAGCTAATCTGTTTAGCGTGTGGAATTCACTTTAGCTCGCTAGATAACTTGACGACTCACCAATCATTTTATTGTACGAAGAGAGAGACCCGATCACCTCGTACTCTGCCTGAAGTAGCGCGACCTGCTCCGGGTTCAGAGGGTGGGTGGAAATGTCCTTGCTGCGACGTGGTGTCTCCAACAGCGGCGGCTGCACAGCGCCATATGGAGGCGCATGCTGGTGTCAAGGCATTTAGGTGCACCATCTGTCGATACCGCGGCAACACCCTAAGAGGAATGCGCACGCATATTAGAATGCACTTCAACAACAAGAAACCTGCTGACCTGCAGGAAGAGAGCTACATAGCGTGCGTGCTGGAAGAAGACAACCGCGAAGTGACTTCTCCTAGTCCAGCAGTGGCGGGAGAGAAGGTTCATCGTTGCGGCAGTTGTGCTTACACCTCCACATACAGAGGTAACGTGGCCAGACACGCTCGTCTGGTCCACGCAACCGACGATCCGGAACCAGAGGAGCAGACTTCTCCAATCCCCGTTGTGGACATAAAAAAGGAGCCTGAAGTGGAAGTTGAGGAAACACCTAACTACTGCAAGTCATGCGATATTTCCTTCAAATACGTGAACACTTACAAGGCCCACAAACAGTTCTACTGCACAGCGAATAACCAGGACTCGGCAGCCAATAACAATGTGCCCGCACCACCTTCTGTCAGAGTGACTGATACTCCAGTGCTGTGA
Protein Sequence: MAVGEDEEWGNESEAMPGEPRTPSSGERAASSGGASPASGGSPEASPPRLRLNTSLATDPALAPSATPLKHEPPSPSPPPPPVPQTRDFLALSATFPALFPAATAPGYICKPCGIRYSSLSTLQAHQEHYCSNRRPKTADGSDPPADPAADESSSDAKTPRPSGKQYACTYCSYSADKKVSLNRHMRMHASSPVSSGTPAPTPTSNGEVTEGPPPQDRYCADCDIRFSSIKTYRAHKAHYCSTRQVVKQALAAVRAGSVTSESAPPSPGATPPAQAQYALALPTNPILIVPYSLLRNASTLPGTTLPDPDTPCFLLPNGTFQPLSRALPNMNSDGKETEVLKSANRPREPSRDAATPLDLSVRRSPESVTTDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSHRSSSPNGTPPPKRRRQNSRDPTPKPPSIPSPPEEKFNPIVPPSMITPALALRLASEMPVTASPQVLVKQGVSKCKECNIVFCKFENYRIHKRHYCSSGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRTLPEVARPAPGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDNREVTSPSPAVAGEKVHRCGSCAYTSTYRGNVARHARLVHATDDPEPEEQTSPIPVVDIKKEPEVEVEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDSAANNNVPAPPSVRVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00319321;
80% Identity: -