Basic Information

Insect: Diatraea saccharalis
Gene Symbol: -
Assembly: GCA_014843785.1
Location: JACGTY010011950.1:1112-10991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.4 35 5.8 1.6 1 23 213 235 213 235 0.97

2 10 0.077 6.9 8.0 6.4 1 23 242 264 242 265 0.93

3 10 0.4 35 5.8 0.4 1 23 269 291 269 291 0.93

4 10 0.00022 0.02 16.0 2.8 1 23 296 319 296 319 0.98

5 10 0.00077 0.068 14.4 0.2 1 23 323 346 323 346 0.95

6 10 0.025 2.2 9.6 0.1 2 20 359 377 359 379 0.94

7 10 3.2 2.9e+02 3.0 0.4 3 23 418 439 416 439 0.91

8 10 0.0032 0.28 12.4 0.5 2 23 455 476 454 476 0.96

9 10 0.00067 0.059 14.5 0.4 1 23 482 504 482 504 0.98

10 10 0.0042 0.37 12.0 2.0 2 23 512 535 512 535 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.4	35	5.8	1.6	1	23	213	235	213	235	0.97
2	10	0.077	6.9	8.0	6.4	1	23	242	264	242	265	0.93
3	10	0.4	35	5.8	0.4	1	23	269	291	269	291	0.93
4	10	0.00022	0.02	16.0	2.8	1	23	296	319	296	319	0.98
5	10	0.00077	0.068	14.4	0.2	1	23	323	346	323	346	0.95
6	10	0.025	2.2	9.6	0.1	2	20	359	377	359	379	0.94
7	10	3.2	2.9e+02	3.0	0.4	3	23	418	439	416	439	0.91
8	10	0.0032	0.28	12.4	0.5	2	23	455	476	454	476	0.96
9	10	0.00067	0.059	14.5	0.4	1	23	482	504	482	504	0.98
10	10	0.0042	0.37	12.0	2.0	2	23	512	535	512	535	0.92

Sequence Information

Coding Sequence: TTATCAAAAAGCAATATACATTCAATAAATCGAGAAGACAACCAGTTAATATCAAATCTTACAACAGTGACTATTATTGATTATTATGATCTTTACATCGAAGAAGTTGATGAAGATGTTGAAAAAGAAGCAGAAGAAGTCAAACCAGAGGATATACCTGATTTAGATTTGATCATTAAAGAGAATTATGAAGATGCAAAAGAAATAATCGATGATATATTATTAAACAAATACGATGAATCCGATGTTAAAGATGATGATTTTTCCTCTGATAATAGTTTACATATAGAAGAAACTAAGAAGAAAAGTGAAGAATGTATGCAATATGAAAAGGTTAAAGAGAATAACGAAGATGAAGAACAAAGAAACAAAGGAATTTTCTTAAACAAATACGATGAATCCGATATTGAAGATGATGATTCTTCCATTGATAATAATAGTTTAGAAGAAATTAAGCAGAATATGCAAAAGAAAAAGTTGCAAACTGATAAACAAGTAGAAATAAAAATGGATGGTCACAAGAAAACGCTTTCATATGAATACTTAAAAAAGTTTACTGTCACTAAATTGACTTTAAAAGAACAAATGGCTGACATAGAAAAAAGAAAAGAGAGTTCGAATTATAAAAATTCACCATATAAGTGTATTAAATGCTATAAAGGTTTCTTGAAAGCGGATACGTATAACACACATATGATTAAACATACTAAGGCTTGCGGGGAGTATTCTTGTGGTATATGTAAGATACATTACAAGCGAAAGTACTTAATGATACATCATAAGGTAATGCATCACGAACAAAAGTTTAATTGTAATATATGTCCGTTCGTCGCGTCGCATCGACAATCCGCCAAACTACACTGGGAATGGCATAATGGGAGGATATATGAATGCCATCAATGCGACGAAGTGTTTCGTAAAGACACGTCATTTAAGAGCCATGTTCGTATCAAACATCCTTCAGACTTCGTTTGTGATCTTTGCGGTTATTCTTTCATCAGCGCCGATGGTGTCAGACTACATAAGAAACTGAAGCATCGATTCAATAGCGAACCAATACCAGACGATGGTCCGTATTGTGAAACTTGTAATATACGTTTCATTGACGAGCAAGCTTTCAATCGCCATCTTTATTTGTCAACGAAACATCCAAACTCTGATGGTACACGAAGAAACGATCGATCGAGGAGGGAGTCGATTACGAAACAACGGGAGAAGATCGTCTTGAATAAAGTCGAAGGACCGATTAATTGTGAACAATGCGGTGTACAAATGAAGAATTCGCGAGCGTACAGCGTTCATTTCAAACAAATGCACCCGGAGAAGAATCGAACCAAATATCCGTCCATGAAATCACCGATTATGTGCGAAGTGTGCGGGAAAATATTCGCGTGTTACGCTCAATTAGAAGATCATAAAAGATCACATAAAGGTGAACGTCCATACGAATGCGACATTTGCGGCAAAACTTTCCTACTGAAGTATGGTATATTTAACCATATACAAACACATATGGCTGGAAAAAATGTGCCGGAATGTGAACTTTGCGGAAAAAAGTTCAAGTGGCAACGCAATAAGACACGGCATATGTTGACAAGAAACCATATTAAGTATAAGCATCATAAAGTACCATGGCCGAAACGGAACAGAGGCAAGAGACGAAAAGACGAAAACGTGAGTCCTTGTTTAATGAAAGCTGTAGTCAAACTAGTGGGCTTCAGGAAGAATAAAACAATAAATATATCAATAAAACAGTAA
Protein Sequence: LSKSNIHSINREDNQLISNLTTVTIIDYYDLYIEEVDEDVEKEAEEVKPEDIPDLDLIIKENYEDAKEIIDDILLNKYDESDVKDDDFSSDNSLHIEETKKKSEECMQYEKVKENNEDEEQRNKGIFLNKYDESDIEDDDSSIDNNSLEEIKQNMQKKKLQTDKQVEIKMDGHKKTLSYEYLKKFTVTKLTLKEQMADIEKRKESSNYKNSPYKCIKCYKGFLKADTYNTHMIKHTKACGEYSCGICKIHYKRKYLMIHHKVMHHEQKFNCNICPFVASHRQSAKLHWEWHNGRIYECHQCDEVFRKDTSFKSHVRIKHPSDFVCDLCGYSFISADGVRLHKKLKHRFNSEPIPDDGPYCETCNIRFIDEQAFNRHLYLSTKHPNSDGTRRNDRSRRESITKQREKIVLNKVEGPINCEQCGVQMKNSRAYSVHFKQMHPEKNRTKYPSMKSPIMCEVCGKIFACYAQLEDHKRSHKGERPYECDICGKTFLLKYGIFNHIQTHMAGKNVPECELCGKKFKWQRNKTRHMLTRNHIKYKHHKVPWPKRNRGKRRKDENVSPCLMKAVVKLVGFRKNKTINISIKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -