Dsac028841.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010010215.1:4918-9085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.2 2.8e+02 3.0 0.2 1 16 88 103 88 105 0.84 2 19 0.27 24 6.3 0.3 1 21 310 330 310 331 0.94 3 19 4.9e-05 0.0044 18.1 1.5 1 23 344 366 344 366 0.98 4 19 6 5.3e+02 2.1 0.1 2 23 370 391 369 391 0.90 5 19 0.019 1.7 10.0 2.0 1 23 396 419 396 419 0.96 6 19 0.05 4.4 8.7 0.2 2 23 474 496 473 496 0.95 7 19 0.028 2.5 9.4 6.9 1 23 502 525 502 525 0.96 8 19 1.3 1.2e+02 4.2 0.7 1 20 529 548 529 550 0.85 9 19 0.0024 0.22 12.8 2.5 1 23 558 581 558 581 0.96 10 19 0.011 1 10.7 1.6 2 23 587 609 586 609 0.94 11 19 0.00043 0.039 15.1 0.2 3 23 623 643 621 643 0.96 12 19 0.0031 0.28 12.4 1.9 1 23 649 671 649 671 0.98 13 19 0.00012 0.011 16.9 3.4 1 23 707 729 707 729 0.99 14 19 0.24 21 6.5 0.1 2 23 734 755 733 755 0.93 15 19 0.15 13 7.1 0.5 2 23 774 796 773 796 0.96 16 19 9.6e-05 0.0085 17.2 1.9 1 23 802 824 802 824 0.99 17 19 0.00018 0.016 16.4 6.5 2 23 831 852 830 852 0.96 18 19 0.009 0.8 11.0 0.5 1 23 858 881 858 881 0.88 19 19 2.1 1.9e+02 3.5 0.6 3 23 888 909 887 909 0.95
Sequence Information
- Coding Sequence
- ATGGGCGATGAAAGGAACGGTATTCACATTGAAGATAAAATCTACGAATCAAGAGCAAATATCAAGTGTTTAAAGCAAAAATTGTTAAACATTTGTAAAACAACAAAGTTTTGTGGCATTTGCTTGAGTAATGATGATAAACTGTGGGCGATAGATACTGAATTTGACTTAACCTTGGGTGAACAGACACAAGCAAAACTGTTGAAAGATATTCTTGATTACATTTTAAACGATATGTCTGATCAAATTCTCACCAGCGTCTACATTTGCAACCATTGTACAGAAAAATCAATTCAATCATACCTATTTATCAACAATACAAAAAACTTATCTGAGATTATATACAAGTGTGTTAATGAACTTTACTCAAAAATTGTTGAAGTTCAGGAGCAATTAAGACAAACTTATAGTGAACATGAGAATTCAAATGTTTTAATTGTAATAGAACCTTACCAATATACAGACGTAAATAAATTAATTGCTGAAGAGGCTCCAATACCAATAGACAATGGAAACACAAATGCAGTTATGTCAAATGAAAGTACTAAAAATGTTGATCTTCCAAATTGTAATAATTGTGTATTATTTGATCATACTGATATCCCAACAAGACAAGATAAAGTTATTATTAAAAGTTTCCCTCCTTTATTTGTTGCTCAAACTGAAGATGAGCAAGGAACGCAAACGCAAGGAAAATGTGTAGAAAAAGAACAAATAACAATAGAAAACACAAATTTACATAATGCAGAAAACTTTAAAATTGATTTTATTGATTCTCCAATTATACAAGTTGATAATGAAATAGAAATCACGTTTATGGATGAAGGGAGTAATACAGATTATTTAAGTGATTCACAAAATAGAGCAGACATAAAACTGTCACCAGGCCCTAGAAAAAGAAAAAAGATAGTAATATCATCTCAAACATATAAATGTAAAACATGCAAAGAAATACTGCCATCCTATAAATCATGGAAAGAACATGTAAAGATATGTCGAACTGTTAAAAATAAATCTAACAAAAACTTATATTACTGTAAAATTTGCTCTGAGCCATTTGTATCACAACGAACTTTAAATACACATTATAAAAGTCATTCGAAAGTTCGCTGTAAAGTTTGTCAATTTATTGTTCCTCAAGAAGATGTAACAGAGCATATGAAAATAAATCATGAGGACTATATACATCCATGCAAATTATGCAAATTTTTCACATACAATGCTGATATGCTAAAAGTGCACATGGAAAAGAGTCATAGTGGATGTAAATGTGCCTTATGTTTTAAAAAAGTGAGTGAATTAAATTTGAAATTACACAAATGCAGATTCAATTGTTTAGAATGCATAGATAACATTTGCATACACTACAAATATTTAGTGTCATATAGAGACCAAGTTTTAAATAATGTTACTAAAATCAAATGTGTGGATTGTGATTATATATGTCCAAGAAGAGAAGCTTTACTTGGACATGCTAATAGGGAACATTTGGATCACCATCCGTTTACTTGTGCACACTGTTCACAACAGTTCTATTCAAGAACTACTTTGAGACATCATTTAAATCAGTTCCACAAAGAAAAACATATCTGTGAGTTTTGTGATCAAGAATTTAATACAACATTCATATTGAATAATCATAAGGAAACATGCCAAAATATTGAAAGGCATCATAAGTGTCATGAATGCACCAGTTCTTTTGTAACTCTAGAAGAATTGGCTAATCATGTTAAGTTGAGACATGACAAGGAATCACTTAATTGCAACTTGTGTAAAAGACAATTTTTCTCCAATAATAAATTACAAGAACATATTTTCAGAGTCCATAGTGGTTTGCAAATGAAGAGGAAGAGAAGTATTTTGGACTGTCCAATATGCGAGGTAAAATATAGTACGAAAAGACAGCTTTTTGAACACATAAAAGATCATGGACCAGAAACTAGGTTCCCTTGTAAACATTGTGAAGCAGATTTTGATAGTTTAAAAAAATTACATGCCCATGTGAGAATCCATTATGATGATGTTATTCAATGCATTGAGTGTAAAAAAGTATTGACTGTGACATTTTTTCCACACCATACGGTTTACTGCAAACCAGGTAAAGACAAAAGAGAAATCTTCACTTGTGAAACATGTGGAAAAACTTACTACTCAGAAATACAGTTAAAATTACATCATAAAACCCACATGGAAAAGATACCATGCCCTATATGCGAAAAACCAACAAAGCCAATGTATATGAAAAACCATATAAAATATATGCACAGTAAACAAAAAAAAACAAAGAAAATTTCTAAGCCAAAAACTAAATACTACATCAAATGTGACTGGTGTGAGCACCTGGTATCTAGATATGGAGAACTAGAAACTCATGTGAATAGATTCCATTTAAAAATAAAGCCATATCAGTGTAACTATTGCAGCAAATCGTTTTTTGGTAAAGAAAGGTTAAGAGATCATCTTATCACGCACACCACTACAAGGACATGTTATTGTAGCGTGTGTGACAAAAAATTCGAAAATAAGGTATGTTTGAAACTACATATGCGCAGGCACACCGGAGACACACCTTACGCTTGTGAAGTATGTGGTGAAAGATTCCGGACTTCTAGCATTATGAACACACACAAAGTAAAAAAACATTCAGAGAAAACGGTTGCTTGTCCACTCTGCGAATCCACATTCTATTTGACGAGAGAAATGAGGAGTCATTTCAAAAAAGTACATTGGAAGCAAAAAGGTAAGAAATTTGATCCAAGAGATGTCAAAGAATTAAATCCTCAATTTTACTATTTGTTTGAAGATGGCAGATTGCCTAAGGTAGAAGGTGAGGATTTGTATATATCATCTAAGTTTAATGAAAAATTTATTTAG
- Protein Sequence
- MGDERNGIHIEDKIYESRANIKCLKQKLLNICKTTKFCGICLSNDDKLWAIDTEFDLTLGEQTQAKLLKDILDYILNDMSDQILTSVYICNHCTEKSIQSYLFINNTKNLSEIIYKCVNELYSKIVEVQEQLRQTYSEHENSNVLIVIEPYQYTDVNKLIAEEAPIPIDNGNTNAVMSNESTKNVDLPNCNNCVLFDHTDIPTRQDKVIIKSFPPLFVAQTEDEQGTQTQGKCVEKEQITIENTNLHNAENFKIDFIDSPIIQVDNEIEITFMDEGSNTDYLSDSQNRADIKLSPGPRKRKKIVISSQTYKCKTCKEILPSYKSWKEHVKICRTVKNKSNKNLYYCKICSEPFVSQRTLNTHYKSHSKVRCKVCQFIVPQEDVTEHMKINHEDYIHPCKLCKFFTYNADMLKVHMEKSHSGCKCALCFKKVSELNLKLHKCRFNCLECIDNICIHYKYLVSYRDQVLNNVTKIKCVDCDYICPRREALLGHANREHLDHHPFTCAHCSQQFYSRTTLRHHLNQFHKEKHICEFCDQEFNTTFILNNHKETCQNIERHHKCHECTSSFVTLEELANHVKLRHDKESLNCNLCKRQFFSNNKLQEHIFRVHSGLQMKRKRSILDCPICEVKYSTKRQLFEHIKDHGPETRFPCKHCEADFDSLKKLHAHVRIHYDDVIQCIECKKVLTVTFFPHHTVYCKPGKDKREIFTCETCGKTYYSEIQLKLHHKTHMEKIPCPICEKPTKPMYMKNHIKYMHSKQKKTKKISKPKTKYYIKCDWCEHLVSRYGELETHVNRFHLKIKPYQCNYCSKSFFGKERLRDHLITHTTTRTCYCSVCDKKFENKVCLKLHMRRHTGDTPYACEVCGERFRTSSIMNTHKVKKHSEKTVACPLCESTFYLTREMRSHFKKVHWKQKGKKFDPRDVKELNPQFYYLFEDGRLPKVEGEDLYISSKFNEKFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -