Basic Information

Insect: Diatraea saccharalis
Gene Symbol: -
Assembly: GCA_014843785.1
Location: JACGTY010004543.1:4178-5507[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.01 0.91 10.8 2.3 1 23 33 56 33 56 0.91

2 10 0.029 2.6 9.4 0.1 5 23 84 103 82 103 0.95

3 10 0.045 4 8.8 2.2 1 23 127 149 127 149 0.97

4 10 0.017 1.5 10.2 1.2 1 23 153 175 153 175 0.85

5 10 0.0034 0.3 12.3 1.2 1 23 179 202 179 202 0.94

6 10 0.073 6.5 8.1 3.3 2 23 209 231 208 231 0.95

7 10 6.4e-05 0.0057 17.7 1.3 1 23 238 261 238 261 0.96

8 10 0.00033 0.029 15.5 4.4 1 23 267 289 267 289 0.98

9 10 7.3e-06 0.00065 20.7 1.2 1 23 295 317 295 317 0.99

10 10 1.1e-06 9.5e-05 23.3 0.8 1 23 323 345 323 346 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.01	0.91	10.8	2.3	1	23	33	56	33	56	0.91
2	10	0.029	2.6	9.4	0.1	5	23	84	103	82	103	0.95
3	10	0.045	4	8.8	2.2	1	23	127	149	127	149	0.97
4	10	0.017	1.5	10.2	1.2	1	23	153	175	153	175	0.85
5	10	0.0034	0.3	12.3	1.2	1	23	179	202	179	202	0.94
6	10	0.073	6.5	8.1	3.3	2	23	209	231	208	231	0.95
7	10	6.4e-05	0.0057	17.7	1.3	1	23	238	261	238	261	0.96
8	10	0.00033	0.029	15.5	4.4	1	23	267	289	267	289	0.98
9	10	7.3e-06	0.00065	20.7	1.2	1	23	295	317	295	317	0.99
10	10	1.1e-06	9.5e-05	23.3	0.8	1	23	323	345	323	346	0.96

Sequence Information

Coding Sequence: ATGACCTCAACAAAACGGAATCGTCTCATGAAGAAAAACGCTATAACCGTTCTAGAGAATTCCACAGTGACACCTTTCAAATGGCACAGGCAAAACTTTCTGTGTTTCTTCTGTCATTTTCCATTCAAAGATCCAAAGTTGCTCAGGGAGCACACGGAAAATCTCCACAAGAAATCCAGTATAAAATCTGCAGTTTCCTACTTGCGAAGAGATGAGAAAGTGAAAATTGACGTATCATACCTTCAATGTAAATGTGGTTATTCTTTGGACAATCTGGATAGTCTCATAGACCATATAAAGGTCCTTCACAAATTTAGTTTTACCGAAGTTTGCGGTTACGGTTTGATCCCTTACAAGTTAGATTTGGAAGGGGATAGTTTCCATTGCGCTGTGTGCACAGAGCAGTTTCAGTACTTCATAAAACTGAACCAGCATATGAATGAGCATTACGGGAACTATGTATGCGAAACGTGTGGGAAATCATTTCTGAGTCAAGACAGATTGCGGTGTCATGCACTAGTCCATGGTGCGAGATTCCGGTGCAATATATGCACAGAAACTTTTGAGTCTTTAACGCAGAAAAACAATCACGAATCCAAAGTTCACGATAAAGTAAAGGAGCTCAAATGCTTTTTCTGTCCAGAAACATTTTCCAACTACAACGTCAGAAAGAGACACCACAATTCTGTACACAACTTGCAAACGCCCGAATTCAAATGTCCCGACTGCGGGAAGTCGTTCCATATCATGAGCAAGATGAAGGTGCATTTAAAAGAGGTTCACATTAAAGAGAAGAATTTCTCGTGTACAGTTTGTGAACAGAAATTTTTCTCCAAGACGCATGTGCAGAAACACATGATCAAGCATTTCGGCGAGAGAGTCTATCAGTGCAGCGTTTGTATGAAGTCGTATGCGAGGAAACAAACTCTCAGAGATCACATGCGAATACATAGTAATGAGAAACGTTTCGTTTGTGCCGTCTGCAGTCAAAGTTTCGTTCAAAATAGTAATTTAACACTTCACATTAAAGTGCATCATCCGGAATTAGCTAACATTTGA
Protein Sequence: MTSTKRNRLMKKNAITVLENSTVTPFKWHRQNFLCFFCHFPFKDPKLLREHTENLHKKSSIKSAVSYLRRDEKVKIDVSYLQCKCGYSLDNLDSLIDHIKVLHKFSFTEVCGYGLIPYKLDLEGDSFHCAVCTEQFQYFIKLNQHMNEHYGNYVCETCGKSFLSQDRLRCHALVHGARFRCNICTETFESLTQKNNHESKVHDKVKELKCFFCPETFSNYNVRKRHHNSVHNLQTPEFKCPDCGKSFHIMSKMKVHLKEVHIKEKNFSCTVCEQKFFSKTHVQKHMIKHFGERVYQCSVCMKSYARKQTLRDHMRIHSNEKRFVCAVCSQSFVQNSNLTLHIKVHHPELANI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00006616;
90% Identity: -
80% Identity: -