Dsac015227.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010006182.1:4395-10884[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.22 20 6.6 0.8 1 23 255 278 255 278 0.96 2 10 0.0033 0.29 12.4 0.5 1 19 285 303 285 303 0.97 3 10 0.0045 0.4 11.9 0.4 2 23 343 365 342 365 0.96 4 10 1.6e-05 0.0014 19.6 1.6 2 23 368 390 367 390 0.94 5 10 4e-05 0.0036 18.4 0.2 1 23 396 418 396 418 0.95 6 10 0.096 8.5 7.8 0.6 2 21 428 447 427 452 0.93 7 10 1.6e-05 0.0015 19.6 4.4 1 23 457 480 457 480 0.93 8 10 0.0082 0.73 11.1 3.3 1 23 486 508 486 509 0.96 9 10 1.8e-05 0.0016 19.5 2.8 1 23 517 539 517 539 0.97 10 10 0.00076 0.068 14.4 0.3 1 23 545 568 545 568 0.95
Sequence Information
- Coding Sequence
- ATGGTTGGAAATATATGTCAGACATGTTTAAGCAAAAATCGGCGATTAATAAAACTATCAAAAGTTCTAGATTTAATACAGAAAATTAATTTAAAAGAGATAATGCTGTTAAATGGTGGAGTTTGCTGGGAATGTTATAAAATTATTGAGAAATTTTCAAATTTTAAATTACAAGTAAAAGTAGCTCAAGAATCTCTGAAACATAAGATCAAAATTGATAAAAGCTTCAGTCATCTATCTGTGCAATCAAAAACTTCATTTGACTACCAGTTTTATTTTAATTTTGACCCATTAACATCTGAAGACAAGAAAAATGAAGATAATATAATTAAAGAAGAAAATTCAGATAATGATTATAACAAACTTGATGATGAAAATGAATCAATAGAAGAAAAACCTAAATTTAATAGTTTTTTGAATGTATATGTTGATTCACTTGAAGTCAATTCTAATAAAGCAACTTCTAACAGTTCAGAATCTTGTGAAACAAATATTTGTGCTAAAAATACTGAAGTATCCGATAAAATTACTCAAAACTATGTAAATAATAGAAAAGATAACTTACAAGCAAAAACTGTAAAAAAGGAGAAAGTGAAAAGGTATCACAAAGAAAGGAAGAAGAAATCTAATGTTCCTATAAGGAAATATGAAGATGGTCACATTGATATAGGAAAAAAATTTACTAAAGTTGTATTTACAGTAGAAGAAATGTTAAAACACAGAGAAGAGAGACGTATTAGACCAAATTTTAAGAAAATACCATTCAAATGTGATTCTTGTCTTGTTGGGTTCACAACCCAAGTAAAATATGATGAACATTTAGAGAAGAAACATAAGGAAAGTATCGGACTTTTCATATGTGATGTGTGCAAAGTCAGGTTTCCTCATAAGAACGCTTTACAGAGACACTGTCCAAAACATTTCATATTCTACAGATGTAAATTGTGTAAATTCGAAAGTGTAGAATTATGGCAAGCTTACAGCCACTGTAAAGGCAGACATAGCACTGACGACCTCAACAATATTCATTGTAAACAATGTTCTGTTGTTGTTAAGACTCCGGAAGAATTGGATGGCCATATGCGAACGCAACATGCATTGTACTGCAATGAGTGCGGTGAGAAATTCAAAAAGAAATCAACTTTGAGGACACACAAAATACGTATACATGGTGTCAAGAGAGAATTTGTTTGTAATATATGTAATAAGAGTTTCATGACGGCTTCCCGTTTGGAAACGCATGCAGCGAACCACAACGATACATTAGCTCAACAGTTATCTTACTGTTCTATATGCAACATTCAATACAAAAGTGTCCATGTATACAGAAGTCATATGAGGCAGAGCGCGGCGCATTCGCTAGATCAGCATTCGTGTCCCGATTGTAACAAGAAGTTTTCATCTAAGGTGTATTTGAATAAACATTATAATTTCTATCACTTGAAGAAGTCCCAGTTCAAATGCGAAGTGTGCAATAAGCTCTTCATATCCGACTGGCGTTTGAAGAATCATAAACAAAAACATCACGGTTTAAGCAGATCAAGGAATCACTCTTGCAATGTTTGCGGAAAGAAATTTTTTACACTTTCTACACTCCGTGGACATCAGCTGACTCATTCTGAACAGCGTAGTTTTATGTGTGAAGACTGCGGGGACACATTCAAACAGAGGCCAGCGCTATACACTCACACTAAACTTGTCCATAAAGGTGTCAAAAGAAAAAAAGAAAAATAG
- Protein Sequence
- MVGNICQTCLSKNRRLIKLSKVLDLIQKINLKEIMLLNGGVCWECYKIIEKFSNFKLQVKVAQESLKHKIKIDKSFSHLSVQSKTSFDYQFYFNFDPLTSEDKKNEDNIIKEENSDNDYNKLDDENESIEEKPKFNSFLNVYVDSLEVNSNKATSNSSESCETNICAKNTEVSDKITQNYVNNRKDNLQAKTVKKEKVKRYHKERKKKSNVPIRKYEDGHIDIGKKFTKVVFTVEEMLKHREERRIRPNFKKIPFKCDSCLVGFTTQVKYDEHLEKKHKESIGLFICDVCKVRFPHKNALQRHCPKHFIFYRCKLCKFESVELWQAYSHCKGRHSTDDLNNIHCKQCSVVVKTPEELDGHMRTQHALYCNECGEKFKKKSTLRTHKIRIHGVKREFVCNICNKSFMTASRLETHAANHNDTLAQQLSYCSICNIQYKSVHVYRSHMRQSAAHSLDQHSCPDCNKKFSSKVYLNKHYNFYHLKKSQFKCEVCNKLFISDWRLKNHKQKHHGLSRSRNHSCNVCGKKFFTLSTLRGHQLTHSEQRSFMCEDCGDTFKQRPALYTHTKLVHKGVKRKKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -