Dsac029154.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010004543.1:8631-11089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.52 47 5.4 0.4 1 23 54 76 54 76 0.95 2 15 0.29 25 6.3 0.0 2 23 104 126 103 126 0.90 3 15 0.027 2.4 9.5 1.2 2 23 147 169 146 169 0.88 4 15 2.3e-05 0.002 19.2 1.0 1 23 174 197 174 197 0.94 5 15 0.01 0.91 10.8 3.3 1 23 201 224 201 224 0.93 6 15 0.082 7.3 8.0 1.1 1 23 226 248 226 248 0.97 7 15 0.082 7.3 8.0 0.3 1 20 254 273 254 275 0.94 8 15 0.00096 0.085 14.1 5.6 1 23 327 350 327 350 0.95 9 15 0.073 6.5 8.1 0.8 2 23 422 444 421 444 0.87 10 15 0.00015 0.013 16.6 2.4 3 23 451 471 449 472 0.93 11 15 6.3e-05 0.0057 17.8 0.7 1 23 477 500 477 500 0.97 12 15 9.7e-05 0.0087 17.2 0.5 2 23 506 528 505 528 0.95 13 15 0.0011 0.1 13.8 8.4 1 23 532 555 532 555 0.98 14 15 0.0063 0.56 11.5 0.3 2 23 562 583 562 583 0.96 15 15 0.025 2.2 9.6 0.3 1 23 589 611 589 611 0.97
Sequence Information
- Coding Sequence
- ATGACGAGTATTTTGGTACAATATAAAGATGCCAATCTTAGCGGTGGGGAAGATGAAAATGAGCCGATTAGCGGACACAAGGCTAATAAGATCATGAGGAGGAATTTGGAAATAATACTGTCTAACACCAATGTGTTACCTTTTAAATGGCGCGGCATATACATGTGCTTTTACTGTGGCGACGAACTAGCAAATCGCGATATTCTTAAGCGTCATACTAAGGACCATGATAAAAGAACCCGCGATGTGGTTATTAAAAATTTGAAGAGTAAAAATTCTGAAGTGAAATTTGATGTATCAGACGGGATCGTATGCCTTCAATGCGATGAACCGTTCGATGACATCGATGGCGTTACGGCACATTTGATCTTTAAACACGAATTACAGTATGACAAGAATCGTGAAATAGACATGGTAGCGTACAATCTAGCAGAGATGAAGTGCGTCGTGTGTGACAAAACATTCGAAAATCTAATCAGGCTCGTAAGACATTGTAATCGTGCCCATCCAAAAAAGTCCTTCGTTTGTAACGAATGTGGTCAGTCGTTTAACAAAAAAAGAGATCTAGTTTCCCATATATATTACTATCACAGACAACAATATGTCTGCAAGCAATGTAATTTGAAATTCGACGATAAAACCGCTTTCCACAAACACAATACGCGTCCCCATTCTTTCGTCTGTAAAGTTTGCTTCGAGAAGTTTCCATCCGATCGCAAGAGGCTGATGCATATGCGTGATCACTTTCAAGATAACAATTTTAAATGCGTCTTTTGTAATAGGCAATTTCAAAGTAAGATAGCTGTGATTAATCACATCTCTCAGTGCAGTAAGAATAAGAAAGATCACGGGAAATTGTATTCGAAAGCGCCTCCCGTCGATATCACTAATAGGAAACAACTCCATTCGCATATAAAGAATAACATTATTACCTTAGTCAATATGTCCACTGCGTTGTTTTTTAAATATTTCAACAAATTCAAATGTTTCTTTTGCAATGAAAGCTTTGTCCACTGTGATGATTTAAAGAGACATGTAACGATACGCCATCCCGTTTGCACTGATGACGATCTGAAATATCTTAAACTTTACGAAGGATATCATTTAAAAGTAGATATATCATCTCTTTCTTGTAAACTCTGTCTGGAACCAATGCCAGATATCGATACACTCACGTCTCATATCATCGATGAACACAAAAGTGATTACGATAAAACTTTTGATTCGAAACTGAAGTCATTTAAACTAACTAGTGATGTGTTGTCATGTTTATCGTGCGATGAAACTTTCGAATCATTTAGGCAGTTGTCAAAGCATAATAGCCTTATGCATTTGAAGGATATAACAATTTGTATGCACTGCGGAAGGTCGTTTAAGTCCGTTGCCAGTTTGCGAGTTCATATATCTCAGCATCATAACCCTGACGGGTATAAATGTGGCGTGTGCAACAAAGAGTTTAGTACGGGCCATCTACTGCGTGGGCACATGGCCAAAGTCCACGGCAATAAGAAAGTTAAATGTAGGGTTTGCGATGAAAAATTCACATCGCCTTACACTATGAGGAGTCACATGCTCAACGAGCACGGCGAAGGCTACAAATGCGAGCATTGTAGCAAAATGTTCAACAGTAATTGCTCTTTGCACGAGCACGTTCGGCGTACGCATTTGAAGCAGAAGAACGCTGAATGCTCTATATGCTCGGAGCGTTTCTTCGACGGTCGATTATTGAAGATACACATGGTGAAACATGTCGGCGAACGAAAGTATAGTTGTGATATTTGCGCTAAAACTTTTTTGTGGAGGAAGAATTTGGTAGCACATATGACATCACATAAAAAAGATTAA
- Protein Sequence
- MTSILVQYKDANLSGGEDENEPISGHKANKIMRRNLEIILSNTNVLPFKWRGIYMCFYCGDELANRDILKRHTKDHDKRTRDVVIKNLKSKNSEVKFDVSDGIVCLQCDEPFDDIDGVTAHLIFKHELQYDKNREIDMVAYNLAEMKCVVCDKTFENLIRLVRHCNRAHPKKSFVCNECGQSFNKKRDLVSHIYYYHRQQYVCKQCNLKFDDKTAFHKHNTRPHSFVCKVCFEKFPSDRKRLMHMRDHFQDNNFKCVFCNRQFQSKIAVINHISQCSKNKKDHGKLYSKAPPVDITNRKQLHSHIKNNIITLVNMSTALFFKYFNKFKCFFCNESFVHCDDLKRHVTIRHPVCTDDDLKYLKLYEGYHLKVDISSLSCKLCLEPMPDIDTLTSHIIDEHKSDYDKTFDSKLKSFKLTSDVLSCLSCDETFESFRQLSKHNSLMHLKDITICMHCGRSFKSVASLRVHISQHHNPDGYKCGVCNKEFSTGHLLRGHMAKVHGNKKVKCRVCDEKFTSPYTMRSHMLNEHGEGYKCEHCSKMFNSNCSLHEHVRRTHLKQKNAECSICSERFFDGRLLKIHMVKHVGERKYSCDICAKTFLWRKNLVAHMTSHKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -