Basic Information

Insect: Diatraea saccharalis
Gene Symbol: -
Assembly: GCA_014843785.1
Location: JACGTY010013062.1:6500-9852[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0001 0.0092 17.1 1.1 2 23 228 249 227 249 0.97

2 9 0.0035 0.31 12.3 4.8 1 23 261 283 261 283 0.98

3 9 5.7e-05 0.0051 17.9 2.8 1 23 291 314 291 314 0.96

4 9 0.01 0.91 10.8 0.5 1 23 321 343 321 343 0.98

5 9 1e-05 0.00089 20.3 3.6 1 23 356 378 356 378 0.98

6 9 9.5e-08 8.5e-06 26.6 0.8 1 23 384 406 384 406 0.96

7 9 2.3e-05 0.0021 19.1 0.2 1 23 412 434 412 434 0.99

8 9 1e-06 9e-05 23.4 0.3 1 23 440 462 440 462 0.98

9 9 5.3 4.7e+02 2.3 2.1 1 14 468 481 468 485 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0001	0.0092	17.1	1.1	2	23	228	249	227	249	0.97
2	9	0.0035	0.31	12.3	4.8	1	23	261	283	261	283	0.98
3	9	5.7e-05	0.0051	17.9	2.8	1	23	291	314	291	314	0.96
4	9	0.01	0.91	10.8	0.5	1	23	321	343	321	343	0.98
5	9	1e-05	0.00089	20.3	3.6	1	23	356	378	356	378	0.98
6	9	9.5e-08	8.5e-06	26.6	0.8	1	23	384	406	384	406	0.96
7	9	2.3e-05	0.0021	19.1	0.2	1	23	412	434	412	434	0.99
8	9	1e-06	9e-05	23.4	0.3	1	23	440	462	440	462	0.98
9	9	5.3	4.7e+02	2.3	2.1	1	14	468	481	468	485	0.81

Sequence Information

Coding Sequence: ATGGAAGAAGCTATAAAATTGAATCCAGAACTATTCTGTAGAGCATGTCTACAGAAATCCGCGAATATGGTGCCGCTAACTAAAGAATTGATCGATAAAGGACGCACACTCGCCGACGTTGTATCATCGGTGTCGAATTTAACCATTAAAACGGAGGAACAGCTTCCTAAACAAGTATGCATCGATTGTGAAGTGATTGCATTAAAAGCTGATGAGTTCAGGCAACGGTGCATCGAGTCTCAGAAAGTTTTATGTAAGATATACGAAAGTAGCGTCGTAGAGCCATCCGTAACAATTCGGAAGATAAAGAAAGAAGAATTAATAAACAAAAGTGATATTAAGACTATTTTGGATATTAGCTACACTCCTGACGAAACAAAACTAGCTAAAACCATGAAAAGTGAACTCGGTAAAACATACCCTTGTGAAATTGATGAAGTTATAGCAAAAGGTGAATTAAAAAAGAATATAAAAGATGAATTACCCTATTTTTCTGATGACTATGGTGCAAATGATATAGATTTTTTAGATAACGCTGACACGGTGGTATTTGATAATGGTATCGGTTTTATGTATACGCTTGATAATGAAGTTCCCGTAGAGAAAATTCAGAATGATTCCGTTATAAAAAGTGAACAGAAGACAAACTCTAGGAAACGCAAGAGATATCTGTTACCTATTAAATGCGAGTGGTGTGGACAGATATTTAAAACGGAAAAGACTTTTATGAAACATAAAAAGGTTCATCTGGAAACTCGTCTCGATATAGAAATAGAATATTTTCAGTGTTCGTCGTGTATGAGAAAGTTCAAGAAGAAAAGTTCTCTGATAGCTCACTTGAAGCATCACGAGTTACAGGACAGTATTAAATTTATATGCGAGACGTGCAAACGTGAATTCAAGCATCAAGGCCATTTAGAAAATCATGTCGCTACTATGCATAGACAAGATAAAGAAGGTTTTACTTGTGATTATTGTTTCTCTATATATCCTACACAGGATTCGTTGGATACCCACGTGGAGAAACATAAGAGAGATAAAACAAAAAAGAAAGAAGACAAAAGACACCGTTGTCATATATGTAATAAAGCCTTCAATATGCTGTCGACTTTGACGGACCATTTACGAATCCACACGGGAGAGAAACCATTTCTATGTTCTATATGCGGTCGCGGTTTCAGTCAAAAGACTAATTTGGCACAACATATGAGGAGACATTTAGGGCTGAAACCGTTTAAATGCAGTGAATGTGAGAGAGGGTTTGTATCGAAGGGTGAGTTAGACGCGCACGAGCGTAAGCACAGCGGCGCCCATCCGTTCGTATGCACAGACTGCGGCGGCGGGTTCACCACCTCCAGCTCACTAGTTAAACATCGCAGAGTACATACCGGAGAGAAGCCTTACTGCTGCGATCTCTGTCCCATGAAGTTCAGTGCTTCAGGTAAATTTCACAAAACTGAAGAATTGTGGTCGAGAAGGAAGCAGAGACTAATGTTGACGTTAAAACGGCGCTTCAATGAATTGCATTTAAAATACCAGCGTGTGTATTTAACATCAGCAAATTCGCTGCAGCATATTATTGATGCAGCGTTGATGGAGTAA
Protein Sequence: MEEAIKLNPELFCRACLQKSANMVPLTKELIDKGRTLADVVSSVSNLTIKTEEQLPKQVCIDCEVIALKADEFRQRCIESQKVLCKIYESSVVEPSVTIRKIKKEELINKSDIKTILDISYTPDETKLAKTMKSELGKTYPCEIDEVIAKGELKKNIKDELPYFSDDYGANDIDFLDNADTVVFDNGIGFMYTLDNEVPVEKIQNDSVIKSEQKTNSRKRKRYLLPIKCEWCGQIFKTEKTFMKHKKVHLETRLDIEIEYFQCSSCMRKFKKKSSLIAHLKHHELQDSIKFICETCKREFKHQGHLENHVATMHRQDKEGFTCDYCFSIYPTQDSLDTHVEKHKRDKTKKKEDKRHRCHICNKAFNMLSTLTDHLRIHTGEKPFLCSICGRGFSQKTNLAQHMRRHLGLKPFKCSECERGFVSKGELDAHERKHSGAHPFVCTDCGGGFTTSSSLVKHRRVHTGEKPYCCDLCPMKFSASGKFHKTEELWSRRKQRLMLTLKRRFNELHLKYQRVYLTSANSLQHIIDAALME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -