Dsac021132.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010004884.1:2333-12566[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 95 4.5 0.1 3 23 113 133 111 133 0.94 2 18 0.086 7.7 7.9 0.3 2 23 137 159 136 159 0.91 3 18 0.28 25 6.3 1.6 3 23 387 408 385 408 0.96 4 18 0.044 4 8.8 0.3 1 19 416 434 416 436 0.96 5 18 0.01 0.89 10.8 0.6 2 23 447 468 446 468 0.95 6 18 1.5 1.3e+02 4.0 0.9 1 23 484 507 484 507 0.81 7 18 0.0034 0.3 12.3 1.2 1 23 516 539 516 539 0.94 8 18 3.6 3.2e+02 2.8 0.5 1 23 550 573 550 573 0.95 9 18 2.7 2.4e+02 3.2 0.6 3 23 618 639 616 639 0.87 10 18 1.4 1.2e+02 4.1 1.2 1 23 644 667 644 667 0.94 11 18 7e-05 0.0062 17.6 4.0 1 23 673 695 673 695 0.97 12 18 1.8e-06 0.00016 22.6 1.5 1 23 702 724 702 724 0.98 13 18 1.5e-05 0.0013 19.8 2.9 1 23 729 751 729 751 0.96 14 18 0.00022 0.02 16.0 2.2 1 23 757 779 757 779 0.98 15 18 1.6e-06 0.00014 22.8 1.4 1 23 785 807 785 807 0.98 16 18 0.00037 0.033 15.4 3.3 2 23 814 835 814 835 0.98 17 18 0.00035 0.031 15.4 0.2 2 23 843 865 842 865 0.96 18 18 0.00057 0.051 14.8 0.4 1 23 870 892 870 892 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCCGACGATTCTGATAACGAACCACTGTCCATTTTAGCTGCGACCAAAAGGTTGAATACTGCAAAGTTTGAAATAAAAAAAGTGAAATCAAATGACGCTGACGCCAAAAGGAAGAAGAAAAAGGCAATAAAAAGAAATAGCCTATCACTAACGATAAAGTTAGGACAGAATGACAACGAGAACAAAGTCATAGAACGCCCTTCCGATGTTTGGTTGTATATGAAAGATTTGAACATTTCTGGACCATATAGTTGCTTATTGTGTACTGGATGGTTTATAAACAGAACAAAAATGATAGTGCACTACATCACAAACCATAAAAAAGATTTCTGTGGCATTTGCAGATATTTTGTAGCAGATAGAGAAGCTTGGGCAAACCATATGACATTTCACATACCGTGGTCTTGTTCTCAATGTACGGAATTATTTCCAACAGAAACGGAAATGAGACGGCATTTGAGCTTCGCACACAATCTTGTTCATTGTCGATTATGTCACTTCAGAGTGTCTGATGACGAACAGTACAATGCCCATCTATTCCAGAAGCATAATGTCACAAACATAACCAGTAAAACAGAAGATATCCTTTGGGAACATGAGTACGATGGTAGCCCTAAATTTCTCTGTATTTTATGTTCCAAAGCGAATAATTTATCAATAAACTTCTTCAATCATTATATGGGATATCACCGTTTCACACTGAAATGTTTTTCAAGCATAATTTCAGGAAGAGACATTCCGTTTTCAGTGGACGGTGCAGATGTAAGCTCACAATTTGTTGACGGTGAGCTAAACCAAATGCGGTATGGTTACATGGATTTAGATAAGAAAAGTCAAGAGAGTTTTGATACTGATGGTGACAGTAATACCATGATGAATGCTCTAATACCAGAAATAAAACAGGAAATCACAAGTGAAGATGAATCAAAACAGGAAAAAAATGAAAACGATCAAAAAAATAATGACGACTTATCAGAAACTTATTTGGGGGATGAGGACTTTGATATAACATCCATGGAGCTGATTGTATTACAGAAATGCTACTTTGACTATATTGAACAGATCATAAATCAGATAAATGATAAAGTGTTCCCAGAAGAATCGACTATTGATTATGAAACTGCAAAACCAGAAATTACTATGAAAATTTTCTGTACTTTATGTAAAACTAATATTGATACCGTACATGACTACACTGTTCATATGAGGAAGATGCATTTAGTGAAAACAGAACCAATGTTTACTTGTAGAGTATGTGCGACTACATTTAACACATACAATGAGCTGGAAAGTCATGCTTATGAGGAACTGAAGGAGTTTGACGACCTATGGATGTGTCAATTTTGTGAAAAAGAGTTTGATAATAGAGAAGCGACGAGACGTCATTTAAATGACCATTGGGATGTTTTAGAATATGACAACTGCTTTAGCCCTCATTTAGGATTTAAATGTAAATATTGTCCAACATTGTTTTGGAATGAAACAGACAGAAAGACACACGAAATCAGAGTTCATTTTAATAAGCATAAAGAAGATTGTTACAAATGTGAAAGCTGTTCTGAGGTTTTTAGTGATAAAGTGTGGTTTGTACACCACTATATAGAAAGACATCAAAGTGAAAATGAGAACACCATTTACCTCTTTAAATGCTGCCTATGCAGTGTGGTTATACCCACAGTTGAAGATATGAGGAATCATTTTGCTACAGATCATCCAGATGCAAGAAAGATTTACTGTTCATTAGGATCTTGTAACTATCGGCCATTAAGTCATAGGAAGTCTTTTAAAATCCATGTCAAGTCTGTTCACAGTCGTGAAGCTATGCAGCAGGAGCGCAGTAGCACGTGCATAATATGCGGTCGTGATTTCGCGACCGCACGCGCTTGCAGTACTCACATGACTCAGGTCCACGGCCCCGGAAAGTTCAAGTGTAAACTATGTCGGGAAGTCATGTACACCAGTGATGAGAGAAAACTACACTACTTGATTAGACACCCTGGACGGCATCCGTTCTCTTGTACGGAATGCGGCAAATCATTCCAGCACAAATCTTCACTGTACATGCACAAGCAAGAACACAGGCCTAACCAGCAGAGTTACACTTGCGACTACTGTGGAAAGACTTTTATGAAGAAGGACTCATTTCGTGAGCACATACAAATCCACGAGGGTCCACGTCACGCTTGCTCGTACTGTCCCAAACGGTTCGTGCAACGTTCTAACATGTTACGGCACGAACGAAGGCATACAGGCGAAAGGCCGTACGCGTGTCCTCATTGCCCGCGCACTTTTTCAGATAAGGGCGCTTGTACAGCACATTCGAGGACGCATACCAAAGACAGGTCCTACGCCTGCCTTTACTGTGGCCAGACATTCGTCCAGAAATCCAAACTTACATATCACATACGAAAGCATACGGGTGAAAATTTAGAGACGTGTTCCGTGTGCTCGAAGCTGTTCACTAGCGCTTGCTCTCTGCGCGAGCACATGAAGACTCACGTAGTGAAGAAGGATACTGTTCCATGTCCGTTATGTGGGCGGAAGTATCAAGATGAACGGTACATGATGCGTCACTTGCGCACAGTGCACGCGGGCACGCGGTACAACTGCCCGCTGTGTCGCAAGTCCCTTACCTCTGCAGCCGGATTGCGTCATCACGTCGTCACGCATAGCGACATTAATATGTTCCGGAAACAAAACAAAAGAATAGTTCAAGGCAAGCTTGGATCAAAAGAAGACCTTGTGTTTATACGATACCACATACCTACCACAGAAATAGATATCAAAGTATCTCCTGTCAAATTACACATGGAGGCCGCTTATAGACTCGCCGTCGGAGGACTTCTATCTCACTTGCGTTAG
- Protein Sequence
- MSSDDSDNEPLSILAATKRLNTAKFEIKKVKSNDADAKRKKKKAIKRNSLSLTIKLGQNDNENKVIERPSDVWLYMKDLNISGPYSCLLCTGWFINRTKMIVHYITNHKKDFCGICRYFVADREAWANHMTFHIPWSCSQCTELFPTETEMRRHLSFAHNLVHCRLCHFRVSDDEQYNAHLFQKHNVTNITSKTEDILWEHEYDGSPKFLCILCSKANNLSINFFNHYMGYHRFTLKCFSSIISGRDIPFSVDGADVSSQFVDGELNQMRYGYMDLDKKSQESFDTDGDSNTMMNALIPEIKQEITSEDESKQEKNENDQKNNDDLSETYLGDEDFDITSMELIVLQKCYFDYIEQIINQINDKVFPEESTIDYETAKPEITMKIFCTLCKTNIDTVHDYTVHMRKMHLVKTEPMFTCRVCATTFNTYNELESHAYEELKEFDDLWMCQFCEKEFDNREATRRHLNDHWDVLEYDNCFSPHLGFKCKYCPTLFWNETDRKTHEIRVHFNKHKEDCYKCESCSEVFSDKVWFVHHYIERHQSENENTIYLFKCCLCSVVIPTVEDMRNHFATDHPDARKIYCSLGSCNYRPLSHRKSFKIHVKSVHSREAMQQERSSTCIICGRDFATARACSTHMTQVHGPGKFKCKLCREVMYTSDERKLHYLIRHPGRHPFSCTECGKSFQHKSSLYMHKQEHRPNQQSYTCDYCGKTFMKKDSFREHIQIHEGPRHACSYCPKRFVQRSNMLRHERRHTGERPYACPHCPRTFSDKGACTAHSRTHTKDRSYACLYCGQTFVQKSKLTYHIRKHTGENLETCSVCSKLFTSACSLREHMKTHVVKKDTVPCPLCGRKYQDERYMMRHLRTVHAGTRYNCPLCRKSLTSAAGLRHHVVTHSDINMFRKQNKRIVQGKLGSKEDLVFIRYHIPTTEIDIKVSPVKLHMEAAYRLAVGGLLSHLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319171;
- 90% Identity
- -
- 80% Identity
- -