Dsac026362.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- Hivep1
- Assembly
- GCA_014843785.1
- Location
- JACGTY010018404.1:2877-4394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00013 0.012 16.8 3.5 2 23 155 176 154 176 0.97 2 9 1e-05 0.00093 20.2 0.9 1 23 182 205 182 205 0.96 3 9 6.9e-06 0.00061 20.8 0.5 1 23 213 235 213 235 0.98 4 9 2.2e-05 0.002 19.2 1.6 1 23 241 263 241 263 0.98 5 9 8.6e-06 0.00076 20.5 0.8 5 23 273 291 270 291 0.93 6 9 1.7e-05 0.0015 19.6 2.8 1 23 298 320 298 320 0.98 7 9 2.9e-06 0.00026 22.0 0.2 1 23 326 349 326 349 0.96 8 9 0.033 3 9.2 3.7 2 23 380 402 379 402 0.94 9 9 0.00019 0.017 16.3 0.7 1 23 439 462 439 462 0.92
Sequence Information
- Coding Sequence
- ATGGATATTAAACTTTGTCGTGTATGTTGTCTTAATAATGGTGATTCAAATATTTATCACACCGATAGTTACGGCGTTTTAATTAGTAAAAAGATCTTAAATTGCTGTCCCAACTTAAAACTATCAGAAGATGATGGACTGCCCACACATATTTGTAAACCTTGTGAAAAGGAACTTGATACTGCCTACCGGTTCATATTAAAATGTGAAACTACAGATAAAACTTTGCGTTCATCAAATGCTTCTAACCTAAAAGTGTCCGATATAATCAATGAAAGCAAACTTAAAGCAGAAGTGAAGATAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGATATTCCACTAGCAGCTATTAAACCTGAAGCGAACAATTCGAATGTAGTAAGTTCCAATAAAATTAAATCTCATAAGAAAAAGAGGAAAAGATCCATCGAACCCGATTCTATTCATTGCTCAATATGTAATCGCAAATGTCAGAATCCTTCTACTTTATTGGCCCATATGCGTTCGCATACAAATGAGAAACCCTACCAATGCCTTTCATGTGATAAAAGTTATAAGGACCCAGGAAGCTTGAAACGACATACAGATCGAAATCATTTAAAGCAAAGAGAGCGCAACTTTATATGCGAAACCTGTGGTAAAGGTTTCTACTCTAAAACAGATGTAGTTACACACATGCGCAGTCATACTGGAGAAACTCCATACACATGCTCAGAATGTCCATCTAAATTCACACAATTAAGTTCATTAATAAGACATCGAACAAAACATACAGGTGAGAAAAGTCAAGTGTGTATAACATGTAACAAAAGATTCAGCACCAAAGATCAACTTAATGCCCATCTGCGTGTACACACAGAAACAAAGAAACAGTTTTCATGTACAATATGTACAGTATTATTTAAGTACAAGAACAATTTAAGAAAACACATGAAAATGCATACGGAACCAAGTAAATTTGTATGCAATTACTGTGGCCGTATTTTTAATTTAAAAGGAAATTTAAAGATACACATTGATCGAGTACACTCTGAAAAGTCTGGATACTGTAATGTTTGCTGTAAGATAGTTTCAAATATTGAAGTACACATGTGGAGGCATACCGGTCAACGACCATTAAAGTGTGAACATTGTACTAGTAGCTTTTATGAACTGAAAGCTCTTGCCCATCATATGAACTTTCGTCATAAATATACAGACAAATATAAATGCATCGTAGAAGGTTGCTTAAGGACATTCCCGTCTTTACCTATGTTGGATTTCCATGTAGCAAAAATACATGAGAGTAACATTAAATTTCCTTGTGATAAATGTTCAAGAGGATTTTACAGGAAAAATGATCTAGCACGCCACAAAATTGGCACTCATAAAGAAAAATTACAGTAA
- Protein Sequence
- MDIKLCRVCCLNNGDSNIYHTDSYGVLISKKILNCCPNLKLSEDDGLPTHICKPCEKELDTAYRFILKCETTDKTLRSSNASNLKVSDIINESKLKAEVKIEXXXXXXXXXXXXXFDIPLAAIKPEANNSNVVSSNKIKSHKKKRKRSIEPDSIHCSICNRKCQNPSTLLAHMRSHTNEKPYQCLSCDKSYKDPGSLKRHTDRNHLKQRERNFICETCGKGFYSKTDVVTHMRSHTGETPYTCSECPSKFTQLSSLIRHRTKHTGEKSQVCITCNKRFSTKDQLNAHLRVHTETKKQFSCTICTVLFKYKNNLRKHMKMHTEPSKFVCNYCGRIFNLKGNLKIHIDRVHSEKSGYCNVCCKIVSNIEVHMWRHTGQRPLKCEHCTSSFYELKALAHHMNFRHKYTDKYKCIVEGCLRTFPSLPMLDFHVAKIHESNIKFPCDKCSRGFYRKNDLARHKIGTHKEKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -