Dsac022776.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010002614.1:3947-21296[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.9 8.8e+02 1.4 0.4 2 11 264 273 263 285 0.81 2 13 0.0013 0.12 13.6 2.2 1 21 290 310 290 314 0.93 3 13 0.059 5.3 8.4 3.0 2 23 424 446 423 446 0.86 4 13 4.6e-05 0.0041 18.2 0.1 1 23 452 474 452 474 0.98 5 13 0.021 1.9 9.8 0.1 1 23 483 506 483 506 0.89 6 13 1.7e-06 0.00015 22.7 4.4 1 23 511 533 511 533 0.98 7 13 2.3e-05 0.0021 19.1 1.0 1 23 539 561 539 561 0.97 8 13 0.0001 0.0091 17.1 4.9 1 23 567 589 567 589 0.98 9 13 3.3e-07 2.9e-05 25.0 0.6 1 23 595 617 595 617 0.98 10 13 0.012 1.1 10.6 5.0 1 23 623 645 623 646 0.96 11 13 0.0066 0.58 11.4 0.1 3 21 653 671 651 672 0.93 12 13 4e-05 0.0035 18.4 0.5 1 23 680 702 680 702 0.96 13 13 2.3e-05 0.002 19.2 2.6 1 23 708 731 708 731 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTCTCTCTCTATAATTCTACAGTTTGTAGATTATGTGGAGAAGAAAATGATAATGGAACTTTCCTTTATTCTAGTGAAGAAAATAATCAAAATCTAAGTGAACTTATCAATACCTATTTACCCATCAAGGTATCAGATGATGGTCAACTTCCTCGAACAATATGCCCTGGATGTACAATACAATTAGAAGCTAATGTAGAGTTCTTGACTCTTATCATTAATGGCCAGAAAGTTATCCGCCAATTACATGAGAGAGAGAAAGACTATAAAAAGACTATTTCTGCTAATTCCACTAACGAGAATCAAATAGTTACTGAAACTGTAATTTATGAAAAGACTGGAGATACAATTTATCCAGATGATCATCCAATATCCTTACAAGTAGGAGGACTTGCAAAGCCTAAACGAAAGCGAGGACGTCCCCCGAAAAAAAACAAACCTCCTGAAGAGAATGTACAGGAGCCAACAAAGTCCCAAGAAGAAAATGAAGTACAAAAAGACTCTAATGAGGAGACCAATGGCAAAAGGCGAAGAAAAACGCCCACTCGCTTCAAAGAGGTCATACAGGGCAAAGAACTCGAAAGGATCTTTATAGAAGAGGGGGTAACAGATGGTGATGAGAGTGAAGATGAACCAAAATCAGATATAATACCTGATGTCGTCCCCGAAACCCCGAAAGAACCTGAGGTGATTGGACACATGGAAAAATCTGGGGAACTTGTTGTGGTCGTCAAAGGGAAGGGACGCGGTAGGCCAAAGGGTAGACTGCGTCAGATAATGTCTCGGTGCGCTATATGCGGGCTAGAGTTCACGTGCGTGGGACGATACATGTCCCATGTGGCGGGGCACGGGCCGGTGCTGTACCAATGTACCGAGTGCCAGTGCTCCTTCCCCACCAGAATACTGTTCACGAGACATCAGGATGAAACGGAACACACGGGACAGAACGTTATACCCTGTGCCGATACAGCGAATAATCAGCAGAATGCTGTTAAAGTAATTACGCCGAAGAAAGAAGTAGACCCGTTAGCACCTATAAGCGAAATCGTGAAAAACGTGAATATTACGAATATTACTCGTAGTCTTCCTGACCTGAATCCCGTCAAATTAGATATAGATGAAATGCCAAATGCACTTAAGTCTGAACAAGTAGATTGCTCCACGTCCAAAGAGAATGCCATACCTAATGAGCTTAACGATGAGGACGCAGATTTAGTCGTCGGTGATGAGGCATCAGGAGATGGTAAAGAAAAAAACAAACTAAAATGTCATAATTGTGACAAGTATTTTAGCAGTAAACAGAGCAGATCTCTGCATAATAAGGCGATCCACCAGGGCGAGAAACCGTACATATGCGGCGAGTGCGGCGCCAAGTTCGCATATCCGCGCTCGCTCACTCTACACATGCTGTCTCACCGCCGCCGACACAACGCCAAGGGGTACGCCTGCGACCTCTGCGGGAAGGTGTTGAACCACCCGTCGTCGGTAGTTTACCACAAGGAGGCTGAGCACGCCGGCCAGCGATACGTCTGCAGCAAGTGCAACAAGAGCTTCAAGCATAAACAGCTGCTGCAGCGACACCAGCTTGTGCACTCGCAGCTGCGGCCCTACTCCTGCAAGACTTGTAACGCATCATTTAAGACGAAGGCGAACCTCGTGAACCACACGCTGTTACACACGGGCGTCAAGAAGTTCTCCTGTGAGATCTGCAAGCACAAGTTTGCACACAAAACCAGCCTCACCCTGCACATGAGATGGCATACCGGTCAGAAGCCGTTCTCGTGCGGCAAGTGCGGCAAGAGCTTCAGTCAGAAGGGCAACTTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACGAGTGCGCGGTGTGCCAGCGCCGCTTCACCACCTCCTCGCAGCATCGCCTGCATGCGCGCCGCCACCACACCGACCGCCCCTACGGATGCAGCACCTGCGGCAAGAGATTCGTGTCCCGCGCGTCGTGGGTGGCGCACTCGCGGCGCGAGGCTGGCGGCGGCGCGGCGCACGCCTGCCCGGTGTGCGCGCGCGCCTTTAACGAGCGGTGGGCGCTGCGCAAGCACATGCGGCGGCACACCGGCGAGCGCCCGCACGCCTGCACACTTTGCCACAAGGCCTTCGCCGACGCGTCCAACCTCAACAAACACAAGAAGCAAGTACACAAGCAGATCAGTCTCTTAGTCAAGGATCTAGCGCCGGGTGCTTCCATTCCCATGTTGCCCCCCGCGCCAGCTCCCCCGCTGCCCGCGGTCTCCCTCCCTCAGGAGCCGGCCACCGCCGCCGAATCCGACTCGGAAGAAGAGCGCGTCATATACGTCGCCTATGACGTCAGCGAGGACGTGCCCGCATATCATATACTTCAGGCTGAACAGGCCGTGTCGGGAGTAGCGGTGGAACATCATCACTTGCAGTTGCAGAACCTGCAGGAGTCCGCCGAAACCAGCGAGCCAGAACAATTACCGGTTACGGACGAAGACGGCAATCCGCTGCATTTCACTATGGAAGACGGTACGCAGCTGGCCATCACACTAGCAGATGGAAAATCTTTACAGATCGTTACGCAAGATGGACAAACAATACCAGTAGAAATTAACAGATATAATGAGGAAGTTGAAGAGGAAGTGGACAATACAGAGACAATAATGGAGCAAATCGACATCAAGAAGAGTGCGGAAGAGAACGAGGTTCCGCCAGTCACACACTTTTTCACGATAGTCTAA
- Protein Sequence
- MEVSLYNSTVCRLCGEENDNGTFLYSSEENNQNLSELINTYLPIKVSDDGQLPRTICPGCTIQLEANVEFLTLIINGQKVIRQLHEREKDYKKTISANSTNENQIVTETVIYEKTGDTIYPDDHPISLQVGGLAKPKRKRGRPPKKNKPPEENVQEPTKSQEENEVQKDSNEETNGKRRRKTPTRFKEVIQGKELERIFIEEGVTDGDESEDEPKSDIIPDVVPETPKEPEVIGHMEKSGELVVVVKGKGRGRPKGRLRQIMSRCAICGLEFTCVGRYMSHVAGHGPVLYQCTECQCSFPTRILFTRHQDETEHTGQNVIPCADTANNQQNAVKVITPKKEVDPLAPISEIVKNVNITNITRSLPDLNPVKLDIDEMPNALKSEQVDCSTSKENAIPNELNDEDADLVVGDEASGDGKEKNKLKCHNCDKYFSSKQSRSLHNKAIHQGEKPYICGECGAKFAYPRSLTLHMLSHRRRHNAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCSKCNKSFKHKQLLQRHQLVHSQLRPYSCKTCNASFKTKANLVNHTLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPFSCGKCGKSFSQKGNLSEHERIHTGEKPYECAVCQRRFTTSSQHRLHARRHHTDRPYGCSTCGKRFVSRASWVAHSRREAGGGAAHACPVCARAFNERWALRKHMRRHTGERPHACTLCHKAFADASNLNKHKKQVHKQISLLVKDLAPGASIPMLPPAPAPPLPAVSLPQEPATAAESDSEEERVIYVAYDVSEDVPAYHILQAEQAVSGVAVEHHHLQLQNLQESAETSEPEQLPVTDEDGNPLHFTMEDGTQLAITLADGKSLQIVTQDGQTIPVEINRYNEEVEEEVDNTETIMEQIDIKKSAEENEVPPVTHFFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -